Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples.

Coenye, Tom; Laevens, Severine; Willems, Anne; Ohlén, Maria; Hannant, Wendy; Govan, John R. W.; Gillis, Monique; Falsen, Enevold; Vandamme, Peter

doi:10.1099/00207713-51-3-1099

Cited by 180 publications

(128 citation statements)

References 21 publications

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“…1). B. caledonica LMG 19076 T was isolated from rhizosphere soil from Edinburgh, UK (Coenye et al, 2001) and no nodulation data exist in the literature for this strain. Strains WSM4181 and WSM4182 (which could not be authenticated on L. ambigua) form group two, and show very high similarity (100%) in 16S rRNA, recA and gyrB to B. graminis LMG 18924 T (Peter Vandamme Ghent University, personal communication).…”

Section: Discussionmentioning

confidence: 99%

Novel Burkholderia bacteria isolated from Lebeckia ambigua – A perennial suffrutescent legume of the fynbos

Howieson

Meyer

Vivas-Marfisi

et al. 2013

Soil Biology and Biochemistry

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Section: Discussionmentioning

confidence: 99%

Novel Burkholderia bacteria isolated from Lebeckia ambigua – A perennial suffrutescent legume of the fynbos

Howieson

Meyer

Vivas-Marfisi

et al. 2013

Soil Biology and Biochemistry

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“…SMD-B02 showed the highest identity to the 16S rRNA gene from the cultured organism Desulfotomaculum salinum (85.8% identity), which is able to grow by sulfate reduction or fermentation (Nazina et al, 2005), and accounted for 14% of all the clones in the library. SMD-B03 showed the closest match to the 16S rRNA gene from the cultured organism Burkholderia fungorum (99.6% identity), which is known as an aerobic bacterium (Coenye et al, 2001). The SMD-B03 clones accounted for 13% of the clones in the library.…”

Section: Microbial Cell Densitymentioning

confidence: 99%

Microbial methane production in deep aquifer associated with the accretionary prism in Southwest Japan

et al. 2009

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To identify the methanogenic pathways present in a deep aquifer associated with an accretionary prism in Southwest Japan, a series of geochemical and microbiological studies of natural gas and groundwater derived from a deep aquifer were performed. Stable carbon isotopic analysis of methane in the natural gas and dissolved inorganic carbon (mainly bicarbonate) in groundwater suggested that the methane was derived from both thermogenic and biogenic processes. Archaeal 16S rRNA gene analysis revealed the dominance of H 2 -using methanogens in the groundwater. Furthermore, the high potential of methane production by H 2 -using methanogens was shown in enrichments using groundwater amended with H 2 and CO 2 . Bacterial 16S rRNA gene analysis showed that fermentative bacteria inhabited the deep aquifer. Anaerobic incubations using groundwater amended with organic substrates and bromoethanesulfonate (a methanogen inhibitor) suggested a high potential of H 2 and CO 2 generation by fermentative bacteria. To confirm whether or not methane is produced by a syntrophic consortium of H 2 -producing fermentative bacteria and H 2 -using methanogens, anaerobic incubations using the groundwater amended with organic substrates were performed. Consequently, H 2 accumulation and rapid methane production were observed in these enrichments incubated at 55 and 65 1C. Thus, our results suggested that past and ongoing syntrophic biodegradation of organic compounds by H 2 -producing fermentative bacteria and H 2 -using methanogens, as well as a thermogenic reaction, contributes to the significant methane reserves in the deep aquifer associated with the accretionary prism in Southwest Japan.

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“…16S rRNA gene sequence analysis was performed as described previously (Coenye et al, 2001a). 16S rRNA gene sequences were determined and deposited in the EMBL public database.…”

Section: Methodsmentioning

confidence: 99%

Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex

Vanlaere

LiPuma

Baldwin

et al. 2008

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

223

143

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The taxonomic position of five recA gene clusters of Burkholderia cepacia complex (Bcc) isolates was determined using a polyphasic taxonomic approach, The levels of 16S rRNA and recA gene sequence similarity, multilocus sequence typing (MLST) data and the intermediate DNA-DNA binding values demonstrated that these five clusters represented five novel species within the Bcc. Biochemical identification of these species is difficult, as is the case for most Bcc species. However, identification of these novel species can be accomplished through recA gene sequence analysis, MLST and BOX-PCR profiling and by recA RFLP analysis. For diagnostic laboratories, recA gene sequence analysis offers the best combination of accuracy and simplicity. Based on these results, we propose five novel Bcc species, Burkholderia latens sp. nov. (type strain FIRENZE 3(T) =LMG 24064(T) =CCUG 54555(T)), Burkholderia diffusa sp. nov. (type strain AU1075(T) =LMG 24065(T) =CCUG 54558(T)), Burkholderia arboris sp. nov. (type strain ES0263A(T) =LMG 24066(T) =CCUG 54561(T)), Burkholderia seminalis sp. nov. (type strain AU0475(T) =LMG 24067(T) =CCUG 54564 (T)) and Burkholderia metallica sp. nov. (type strain AU0553(T) =LMG 24068(T) =CCUG 54567(T)). In the present study, we also demonstrate that Burkholderia ubonensis should be considered a member of the Bcc

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Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples.

Cited by 180 publications

References 21 publications

Novel Burkholderia bacteria isolated from Lebeckia ambigua – A perennial suffrutescent legume of the fynbos

Novel Burkholderia bacteria isolated from Lebeckia ambigua – A perennial suffrutescent legume of the fynbos

Microbial methane production in deep aquifer associated with the accretionary prism in Southwest Japan

Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex

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