BZR proteins: identification, evolutionary and expression analysis under various exogenous growth regulators in plants

Ullah, Uzair; Shalmani, Abdullah; Ilyas, Muhammad; Raza, Ali; Ahmad, Sheraz; Khan, Fahim Ullah; Azizuddin, -; Bibi, Amina; Rehman, Shafee Ur; Abbas, Zaheer; Buttar, Zeeshan Ali

doi:10.1007/s11033-022-07814-2

Cited by 11 publications

(2 citation statements)

References 47 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…2 ). The annotations of the SMART database and the ML-phylogenetic tree constructed using the best model also support our classification results [ 20 , 31 , 32 ]. Each of the classes is represented by specific domains or domain combinations.…”

Section: Discussionsupporting

confidence: 71%

TALE gene family: identification, evolutionary and expression analysis under various exogenous hormones and waterlogging stress in Cucumis sativus L.

Ahmad,

Khan,

Saleh

et al. 2024

BMC Plant Biol

Self Cite

View full text Add to dashboard Cite

Background Three Amino acid Loop Extension (TALE) belongs to the homeobox group of genes that are important constituents of plant systems. The TALE gene family is instrumental not only in growth and development but also plays an essential role in regulating plant response to environmental adversaries. Results In the present study, we isolated 21 CsTALE genes from the cucumber (Cucumis sativus L.) genome database. Bioinformatics tools were put in place to understand the structural and functional components of the CsTALE gene family. The evolutionary analysis dissected them into seven subclades (KNOX-I, KNOX-II, and BELL-I to BELL-V). The cis-acting elements in the promoter region of CsTALE genes disclosed that they are key regulators of hormonal and stress-related processes. Additionally, the STRING database advocated the concerting role of CsTALE proteins with other key transcription factors potent in plant developmental biology. The CsmiR319 and CsmiR167a-3p targeting the CsTALE15 and CsTALE16, respectively, further assert the importance of the CsTALE gene family posttranscriptional-related processes. Tissue-specific gene expression unfolded the fundamental involvement of CsTALE genes as they were expressed throughout the developmental stages. Under waterlogging stress, the CsTALE17 expressed significantly higher values in WL, WL-NAA, and WL-ETH but not in WL-MeJA-treated samples. Conclusions The present study reveals the evolution and functions of the CsTALE gene family in cucumber. Our work will provide a platform that will help future researchers address the issue of waterlogging stress in the Yangtze River Delta.

show abstract

Section: Discussionsupporting

confidence: 71%

TALE gene family: identification, evolutionary and expression analysis under various exogenous hormones and waterlogging stress in Cucumis sativus L.

Ahmad,

Khan,

Saleh

et al. 2024

BMC Plant Biol

Self Cite

View full text Add to dashboard Cite

show abstract

“…Additionally, PbMGT protein sequences were analyzed using the GO tool Blast2GO (Version 2.7.2) (http://www.blast2go.com) (accessed on 3 February 2024) [24]. By repeating the steps outlined in earlier research with [25], we were able to reassemble the three categories into which the cellular component GO categorization, molecular functions, and biological processes fell.…”

Section: Gene Ontology Analysis Of Pbmgt Genesmentioning

confidence: 99%

Transcriptomic Database Analysis of Magnesium Transporter (MGT) Gene Family in Pear (Pyrus bretschneideri) Revealed Its Role in Reproductive Stage Development

Ma,

Ding,

Khan

et al. 2024

Horticulturae

View full text Add to dashboard Cite

The membrane proteins of the magnesium transporter (MGT) family are essential to Mg homeostasis. However, there has not been a comprehensive study of MGT in pear. The 17 MGT that were renamed to PbMGT1-17 in this study were found in the pear genome database. Phylogenetically, PbMGT proteins were categorized into three groups, namely NIPA, MRS2, and CorA. The majority of PbMGT were hydrophobic proteins situated on the chloroplast, according to the characterization study. Members of the same group shared comparable conserved motifs and gene structure, as revealed by motif and exon/intron analysis. The application of gene ontology (GO) and cis-elements has demonstrated that PbMGT genes exhibit a high degree of sensitivity to stressors and take part in chloroplast development and Mg+ ion transport. It was discovered by tissue-specific expression analysis that PbMGT genes might have a role in the development of organs. The critical significance of PbMGT was shown through comprehensive expression in five pear cultivars at various fruit developmental stages. The PbMGT5 gene was significantly expressed throughout fruit development, suggesting a role in the setting and ripening processes of pear fruits. For the first time, our research brought attention to the function of PbMGT genes as they relate to fruit development. Our research is likely to serve as an incentive for the development of pear breeding initiatives in the future.

show abstract

Transcriptome-Wide Analysis Revealed the Influential Role of PbrMTP (Metal Tolerance Protein) in the Growth and Fruit Development of Chinese White Pear

Xu,

Ali,

et al. 2023

J Plant Growth Regul

View full text Add to dashboard Cite

BZR proteins: identification, evolutionary and expression analysis under various exogenous growth regulators in plants

Cited by 11 publications

References 47 publications

TALE gene family: identification, evolutionary and expression analysis under various exogenous hormones and waterlogging stress in Cucumis sativus L.

TALE gene family: identification, evolutionary and expression analysis under various exogenous hormones and waterlogging stress in Cucumis sativus L.

Transcriptomic Database Analysis of Magnesium Transporter (MGT) Gene Family in Pear (Pyrus bretschneideri) Revealed Its Role in Reproductive Stage Development

Transcriptome-Wide Analysis Revealed the Influential Role of PbrMTP (Metal Tolerance Protein) in the Growth and Fruit Development of Chinese White Pear

Contact Info

Product

Resources

About