Anaerobic process modelling is rapidly expanding as new processes and reactor designs are developed, and a better understanding of the underlying processes is established. At the same time, new applications and demands on the art have been developed, particularly the generation of bioenergy and fuels, as well as plant-wide modelling of wastewater processes, and the integration of activated sludge and anaerobic models. This has required a rethink of what should go in the model, with a focus on the biochemical pathways (resulting in e.g., the IWA Anaerobic Digestion Model No. 1 -ADM1) shifting towards a better description of associated processes, such as chemistry, gas transfer, and organic solubilization, as well as new topics such as integration with hydrodynamics. In this chapter, we take a very broad view of anaerobic process modelling, including new applications, model development fit for applications, determining biochemical structure and potential new structures, as well as the identification and characterization of processes fit for modelling. While based on fundamentals, this leads to a practical view of how to best apply this diverse range of techniques to best solve real problems in anaerobic process modelling. A general approach to the problem of parameter and input characterization applicable to the broad range of processes and problems generally modelled is also included.