The C-repeat-binding factor (CBF)/dehydration-responsive element-binding factor (DREB1) proteins constitute a small family of Arabidopsis transcriptional activators (CBF1/DREB1B, CBF2/ DREB1C, and CBF3/DREB1A) that play a prominent role in cold acclimation. A fundamental question about these factors that remains to be answered is whether they are functionally equivalent. Recently, we reported that CBF2 negatively regulates CBF1 and CBF3 expression, and that CBFs are subjected to different temporal regulation during cold acclimation, which suggested this might not be the case. In this study, we have analyzed the expression of CBF genes in different tissues of Arabidopsis, during development and in response to low temperature, and characterized RNA interference (RNAi) and antisense lines that fail to accumulate CBF1 or/and CBF3 mRNAs under cold conditions. We found that CBF1 and CBF3 are regulated in a different way than CBF2. Moreover, in contrast to CBF2, CBF1 and CBF3 are not involved in regulating other CBF genes and positively regulate cold acclimation by activating the same subset of CBF-target genes. All these results demonstrate that CBF1 and CBF3 have different functions than CBF2. We also found that the CBF regulon is composed of at least two different kind of genes, one of them requiring the simultaneous expression of both CBF1 and CBF3 to be properly induced. This indicates that CBF1 and CBF3 have a concerted additive effect to induce the whole CBF regulon and the complete development of cold acclimation.freezing tolerance ͉ low temperature ͉ DREB1 ͉ abiotic stress ͉ cold signaling T he identification of the C-repeat-binding factors (CBF1-3)(1-3), also named dehydration-responsive element-binding factors (DREB1B, -1C, and -1A, respectively) (4), represented a significant step toward the understanding of how gene expression is regulated during cold acclimation, the adaptive response whereby many plants increase their freezing tolerance in response to low nonfreezing temperatures (5). The CBFs/DREB1s belong to the AP2/EREBP family of transcription factors (6) and bind to the cold-and dehydration-responsive DNA regulatory element designated C-repeat (CRT)/dehydration response element (DRE) (7,8). CRT/DRE elements contain the conserved CCGAC core sequence, which is sufficient to activate gene transcription under cold stress (7,8) and is present in the promoters of many cold-inducible genes (9). The CBF/DREB1 genes do not contain the CCGAC sequence in their promoters but are also induced by low temperature. This induction is transient and precedes that of cold-inducible genes with the CRT cis element. The expression of CBF/DREB1 genes, however, is not activated by dehydration and salt stress (2-4).An important issue in the study of CBFs is their individual function. Despite extensive research carried out on these transcriptional activators, whether they have overlapping function (s) has not yet been conclusively established. Constitutive overexpression of each CBF in Arabidopsis results in similar express...