“…We then used the predicted cell type of the majority of cells in each cluster to guide cluster annotation, also taking into account cell marker genes published in literature and cell marker databases 87,88 . The following populations were confirmed: Alveolar macrophages (Siglecf + , Marco + ) 89 , interstitial macrophages (C1qb + ) 90 , monocytic macrophages (Ccr2 + , Ccr5 + , Arg1 + ) 91,92 , Treml4 + -monocytes (Treml4 + ) 93 , neutrophils (S100a8 + , Cxcr2 + , Camp + ) 44,94 , myeloid dendritic cells (mDC) (Flt3 + , H2-Ab1 hi , Irf8 lo , Tcf4 lo ) and plasmacytoid dendritic cells (pDC) (Flt3 + , H2-Ab1 hi , Irf8 hi , Tcf4 hi ) 85,95-97 , T / NK / cells (Cd3e + , Cd4 + or Cd8a + , Gzma + , Nkg7 + ) 85,94,98-100 , B cells (Cd79b + , Ms4a1 + ) 44,101 , alveolar epithelial cells type 1 (Rtkn2 + ) 90 , endothelial cells (Pecam1 + ) 89 , ciliated epithelial cells (Foxj1 + )…”