The receptor for the homeostatic T cell cytokine interleukin-7 (IL-7Ra) has recently shown genetic association to multiple sclerosis (MS). To investigate the functional contribution of IL-7Ra polymorphisms to the pathogenesis of MS, we correlated the IL-7Ra haplotypes with different T cell parameters in a group of MS patients and healthy controls. We show that carriers of one of the four IL-7Ra haplotypes (Hap4) show a higher expression of IL-7Ra (CD127) on their CD4þ T cells, compared with noncarriers (P ¼ 0.04). Moreover, Hap4 carriers possess higher frequencies of recent thymic emigrants (RTEs, CD31 þ ) in both the regulatory T cell (Treg; P ¼ 0.007) and conventional T cell (Tconv) population (P ¼ 0.0001). This effect is most pronounced within the MS population (Treg, P ¼ 0.0077; Tconv, P ¼ 0.0007), whereas in healthy controls significance was only reached for Tconv (P ¼ 0.043; Treg, P ¼ 0.11). Because previous studies showed a decreased RTE-Treg frequency in MS patients compared to healthy subjects, we here conclude that this decrease is localized within the MS population of non-Hap4 carriers. In conclusion, our findings suggest that IL-7Ra polymorphisms can influence T cell development and homeostasis, and thereby contribute to the altered immune regulation associated with disease development in patients with MS.