Reporter clones of Staphylococcus aureus with different SOS response-and DNA repair-associated promoterlux gene fusion constructs were constructed to study the effects of sub-MICs of antibiotics on the transcription of the SOS and methyl mismatch repair (MMR) genes. Fluoroquinolones (FQs) upmodulated both the SOS and the MMR genes. The patterns of antibiotic-induced transcriptional modulation were altered in FQresistant mutants.Subinhibitory concentrations (sub-MICs) of antibiotics are known to provoke extensive transcriptional changes in bacteria (28,29). The expression of virulence functions such as toxins, adhesins, and biofilm formation in the human pathogen Staphylococcus aureus is affected by exposure to sub-MICs of antibiotics (2,6,7,11,12,14,19). Sub-MICs of certain antibiotics, in particular, compounds whose primary mode of action is DNA damage, are known to enhance mutation rates in bacteria (15). This is usually the result of transcriptional changes in the genes responsible for DNA repair and preservation of the integrity of the genome, such as the SOS and methyl mismatch repair (MMR) pathways (10,24,25). DNA polymerases of the SOS system lack intrinsic proofreading activity, which leads to mutations when DNA replication bypasses lesions or errors (24). The MMR system maintains the fidelity of DNA replication by postreplicative correction of base mismatches, small insertions, or deletions (8); a strong mutator phenotype is associated with genetic defects in the MMR system (21).We have studied the effects of sub-MICs of antibiotics of different chemical classes and with different modes of action on the principal mediators of the SOS response in S. aureus, lexA and recA (16) (Fig. 1A). We also examined other known or presumptive SOS response genes, umuC, sosA (SAOUHSC_ 01334), dinB, and recF (9), and known or presumptive MMR genes, mutSL (25, 27), mutS2 (SAOUHSC_01099), mutS3 (SAOUHSC_02276), and mutT (SAOUHSC_00429) (see Table SA in the supplemental material). The respective promoter regions (234 to 661 bp) were amplified by PCR and inserted into pAmiLux (L. R. Mesak et al., unpublished data), a promoter cloning vector, at a BamHI site upstream of a modified Photobacterium luminescens luxABCDE (lux) operon encoding luciferase (luxAB) and fatty acid reductase (luxCDE) from pAL2 (4). The constructs were introduced into S. aureus RN4220 (18), and the effects of the antibiotics on transcription in cells grown in NYE medium (26) were monitored by obtaining luminescence measurements. A single colony of S. aureus from NYE agar was resuspended in 200 l water, mixed with 0.7% agar (1:1,000), and poured as an overlay on NYE agar. Paper disks containing selected antibiotics were placed on the overlay, and the culture was incubated at 37°C. After 20 h, luminescence was detected with a luminograph LB980 photon camera (Berthold). Liquid assays were performed at room temperature in a clear-bottom 96-well plate by using starting cultures with an optical density at 595 nm of 0.150. Luminescence was recorded hourly for ...