Deoxyribonucleic acid (DNA)-DNA hybridization was used to determine the relationships of Mycobacterium paratuberculosis and Mycobacterium avium to 24 mycobacterial strains representing seven species. Our results indicate that M . paratuberculosis should be considered a member of the same genomic species as M. avium and the wood pigeon bacillus. Mycobacterium scrofulaceum, which has been considered a member of the M . avium-Mycobacterium intracellulare-M. scrofulaceum complex on the basis of phenotypic characteristics, shows little DNA similarity to M . avium, M. intracellulare, or M. paratuberculosis.Classification of the slow-growing mycobacteria on the basis of phenotypic characteristics has been a complicated and uncertain process. There is relatively little variability among strains thought to typify separate species, and there is significant variation in the phenotypic characteristics of isolates which appear to belong to the same species (26,(33)(34)(35). This is particularly true of Mycobacterium paratuberculosis. Phenotypic variation within the species precludes identification of a clear pattern of biochemical responses in an Adansonian system. The characteristics exhibited by fresh isolates may change with storage or repeated passage (9, 26). Mycobactin dependency, hydrolysis of Tween 80, and catalase activity at pH 5 after heating are the characteristics which have been used to distinguish M . paratuberculosis from Mycobacterium avium. When these criteria are used, the wood pigeon bacillus (22, 33) resembles M . paratuberculosis rather than M . avium, as do some other M . avium isolates cultured from swine lymph nodes and lesions in birds (8,22,26,33).Antibiotic susceptibility patterns have been used in attempts to distinguish M . paratuberculosis from M . avium. M . paratuberculosis is often susceptible to streptomycin and rifampin, as well as to neotetrazolium chloride, whereas M . avium is usually resistant to all three antibiotics. These responses are also variable (9,34).Mycobacterium scrofulaceum has often been included as a member of the M . avium-Mycobacterium intracellulare-M. scrofulaceum (MAIS) complex on the basis of phenotypic characteristics (35), although the relationship of M. scrofulaceum to M . paratuberculosis has not been examined by other investigators.There is a need for better methods of defining the relationship of M . paratuberculosis to other mycobacterial species. Although numerous investigations on mycobacterial deoxyribonucleic acid (DNA)-DNA hybridization have been reported (3)(4)(5)7, 10, 13,16,17)
MATERIALS AND METHODSBacterial strains. The 24 mycobacterial strains used in this study are listed in Table 1. The cells were grown in Middlebrook 7H9 medium supplemented with Dubos oleic-albumin complex (100 ml/liter) and 0.05% Tween 80 and were cultivated by standard methods (9). The M . paratuberculosis cultures were further supplemented with 2 mg of mycobactin J (Allied Laboratories, Inc., Ames, Iowa) per liter. Cells were pelleted by centrifugation at 6,000 x g for 15 min...