Most HIV-infected individuals develop antibodies to the gp120 and gp41 components of the viral spike; however, only a fraction of these individuals mount a broadly neutralizing serum response against HIV. We have cloned anti-HIV antibodies from the memory B-cell compartment of six individuals with variable viral loads and high titers of broadly neutralizing antibodies. Here, we report on the features of the anti-gp41 response in these patients. Competition experiments with previously characterized antibodies targeting defined epitopes on the gp41 ectodomain showed antibodies directed against the "immunodominant region" (cluster I), the carboxy-terminal heptad repeat (cluster II), and the membrane-proximal external region (cluster IV). On the other hand, antibodies directed against the amino-terminal part of the molecule, including the fusion peptide, polar region, and the N-terminal heptad repeat, were not detected. When all patients' data were combined, unique B-cell clones targeting cluster I, II, and IV accounted for 32%, 49%, and 53% of all anti-gp41-reactive B cells, respectively; therefore, no single region was truly immunodominant. Finally, although we found no new neutralizing epitopes or HIV-1-neutralizing activity by any of the gp41 antibodies at concentrations of up to 50 g/ml, high concentrations of 7 out of 15 anti-cluster I antibodies neutralized tier 2 viruses.The trimeric envelope spike of the human immunodeficiency virus (HIV) consists of three heterodimers of the transmembrane glycoprotein (gp41) and the surface glycoprotein (gp120) (59). Whereas gp120 carries the CD4 and chemokine receptor binding sites, gp41 is crucial for fusion between the viral particle and the cell membrane (Fig. 1a). The glycine-rich fusion peptide, located at the amino-terminal region of gp41, is normally covered by gp120 but is transiently exposed for interaction with the target cell membrane when gp120 binds to its receptors (14). The fusion peptide is followed by a serine/ threonine-rich polar region and heptad repeats, which form leucine zippers that mediate assembly of the coiled-coiled form of gp41 in response to gp120 engagement (8,22,24,52). Finally, the membrane-proximal external region (MPER) also plays a role in virus-host membrane fusion (38); however, the mechanism by which it enhances fusion is not known.Some regions of gp41 are accessible to antibodies on the native gp140 trimer; however, others are exposed to the immune system only after gp120 shedding (40). In addition, otherwise cryptic gp41 epitopes are uncovered during viral fusion with the cell membrane (13). Consistent with gp41 exposure to the immune system, serologic studies of infected individuals indicate that there is a strong humoral response to gp41 during HIV infection (35) which precedes the response against gp120 (26).Antibodies to gp41 have been isolated from phage display libraries, as have Epstein-Barr virus (EBV) immortalized B cells from infected individuals (4, 53). Some of these anti-gp41 antibodies can neutralize HIV infection in ...