The nucleotide sequence for the 4.5-5S ribosomal DNA region from the chloroplastids of soya beans was determined as the basis of further comparative studies on the structure and evolution of this intergenic region. Comparisons with other plant sequences as well as equivalent sequences in eubacteria suggest that the longer internal transcribed spacer regions of plants have evolved, at least in part, by DNA sequence duplications and that the presence of the 4.5S rRNA in chloroplast may result from the accidental acquisition of a RNA maturation site during the evolution of longer internal transcribed spacer regions. Estimates of the secondary structures also indicate only a very limited retention of structural features and suggest that the primary role of the intergenic sequences may be to bring processed sites into close proximity.
INTRODUCrIONWhile the ribosomal RNAs of chloroplasts more closely resemble those of eubacteria, the chloroplast ribosomes of flowering plants contain two low molecular weight RNA components (1-4), the commonly observed 5S RNA and a somewhat smaller 4.5S rRNA. Sequence studies indicate that all of the chloroplast rRNAs are transcribed as a common larger precursor molecule, the sequences being arranged in the order 5'-16S-23S-4.5S-5S-3' (5-7). As ribosomal RNA from many origins have been sequenced, comparisons have clearly shown (5-8) that the 4.5S rRNA sequence is not unique to plant chloroplasts; it is actually equivalent to the 3' end of the eubacterial 23S rRNA and is the result of an extra cleavage or processing step in the chlorplast rRNA precursor.Although most mature ribosomal RNAs are products from the processing of larger precursor molecules, in many instances relatively little is known about the structural features which underlie these cleavages or the enzymatic mechanisms by which these cleavages occur (e.g. ref.