Three-dimensional neurite outgrowth rates within fibrin matrices that contained variable amounts of RGD peptides were shown to depend on adhesion site density and affinity. Bi-domain peptides with a factor XIIIa substrate in one domain and a RGD sequence in the other domain were covalently incorporated into fibrin gels during coagulation through the action of the transglutaminase factor XIIIa, and the RGD-dependent effect on neurite outgrowth was quantified, employing chick dorsal root ganglia cultured two-and three-dimensionally within the modified fibrin. Two separate bi-domain peptides were synthesized, one with a lower binding affinity linear RGD domain and another with a higher binding affinity cyclic RGD domain. Both peptides were crosslinked into fibrin gels at concentrations up to 8.2 mol of peptide/mol of fibrinogen, and their effect on neurite outgrowth was measured. Both two-and three-dimensional neurite outgrowth demonstrated a bi-phasic dependence on RGD concentration for both the linear and cyclic peptide, with intermediate adhesion site densities yielding maximal neurite extension and higher densities inhibiting outgrowth. The adhesion site density that yielded maximal outgrowth depended strongly on adhesion site affinity in both two and three dimensions, with lower densities of the higher affinity ligand being required (0.8 -1.7 mol/mol for the linear peptide versus 0.2 mol/mol for the cyclic peptide yielding maximum neurite outgrowth rates in three-dimensional cultures).Cell adhesion and migration in two and three dimensions play important roles in a host of physiological phenomena, including neurite extension (1), angiogenesis (2), and immune responses (3). The adhesion of cells within their environment is controlled primarily by the binding of cell surface receptors to short, exposed protein domains in the extracellular matrix. An important receptor family involved in adhesion and migration is the integrins, a class of heterodimeric receptors that interact with both extracellular matrix and cell-surface ligands (4, 5). Each unique dimeric receptor binds to a particular subset of ligands, which can often be mimicked with immobilized short peptides (6). One such short peptide that binds to integrins and influences subsequent cell adhesion and migration is RGD, a motif present in many proteins, including fibronectin, laminin, collagen, and fibrinogen (7). This sequence has been shown to be recognized by ␣ 5  1 , ␣ v  3 (8), and several other integrin heterodimer pairs.Adhesion and migration upon a surface are distinct processes that depend on related molecular mechanisms. Cell adhesion involves the dynamic interaction between cell surface receptors and adhesion ligands on the supporting matrix (9, 10), with the strength of this attachment being related to the concentration of cell-surface receptors, the concentration of ligands available, and the specific binding affinity of the receptor ligands and pairs (11). Migration of cells upon a material is an analogous phenomenon, with the rate of cell...