Since the enantio or diastereoselective preparation of sulfoxides is a current challenge, we explore the possibility of inducing diastereoselectivity in the oxidation of the sulfur atom of thiodisaccharides, and S sulfoxides in a similar ratio (1.4 : 1 and 1.6 : 1, respectively). In contrast, the oxidation of thiodisaccharide with a free hydroxyl group at C-6 was completely diastereoselective in favor of the R sulfoxide. The influence of the thiodisaccharide C-6 substituent on the stereochemical course of the oxidation is discussed.