The cytogenetic endpoints sister chromatid exchange (SCE) and chromosome aberrations are widely used as indicators of DNA damage induced by mutagenic carcinogens. Chromosome aberrations appear to result directly from DNA double-strand breaks, but the lesion(s) giving rise to SCE formation remains unknown. Most compounds that induce SCEs induce a spectrum of lesions in DNA. To investigate the role of double-strand breakage in SCE formation, we constructed a plasmid that gives rise to one specific lesion, a staggered-end ("cohesive") DNA double-strand break. This plasmid, designated pMENs, contains a selectable marker, neo, which is a bacterial gene for neomycin resistance, and the coding sequence for the bacterial restriction endonuclease EcoRI attached to the mouse metallothionein gene promoter. EcoRI recognizes G | AATTC sequences in DNA and makes DNA double-strand breaks with four nucleotides overhanging as staggered ends. Cells transfected with pMENS were resistant to the antibiotic G418 and contained an integrated copy of the EcoRI gene, detectable by DNA filter hybridization. The addition of the heavy metal CdSO4 resulted in the intracellular production of EcoRI, as measured by an anti-EcoRI antibody. Cytogenetic analysis after the addition of CdSO4 indicated a dramatic increase in the frequency of chromosome aberrations but very little effect on SCE frequency. Although there was some intercellular heterogeneity, these results confirm that DNA double-strand breaks do result in chromosome aberrations but that these breaks are not sufficient to give rise to SCE formation.Most mutagenic carcinogens induce sister chromatid exchanges (SCEs), chromosome aberrations, or both in eucaryotic cells. Although there is evidence that DNA doublestrand breaks lead to the formation of chromosome aberrations (3,6,(19)(20)(21)34), the precise lesion(s) and the mechanisms involved in the formation of SCEs are unknown. The relationship between a particular DNA lesion and its biological effect is often obscured by the fact that most mutagenic carcinogens induce a spectrum of lesions, the proportions of which vary in different cell types. For example, ionizing radiations induce single-and doublestrand breaks and make numerous base modifications (31), UV light generates cyclobutane and (6-4) pyrimidine-pyrimidone dimers plus a host of minor photoproducts (24), and alkylating agents alkylate both purines and pyrimidines in different ratios depending on the compound used (29). Ideally, to define the range of cytogenetic effects due to particular lesions, a specific class of lesions would be induced in cellular DNA in vivo, and the cytogenetic endpoint in question would be examined.Bacterial restriction endonucleases recognize specific, rather short sequences of DNA as binding sites. Binding is followed by either blunt-end or cohesive-end DNA cleavage at the recognition site itself or elsewhere, depending on the enzyme. A restriction endonuclease makes a double-strand break and few or no other perturbations in DNA. In the past, when ...