Genome integrity is crucial for cellular survival and the faithful transmission of genetic information. The eukaryotic cellular response to DNA damage is orchestrated by the DNA damage checkpoint kinases ATAXIA TELANGIECTASIA MUTATED (ATM) and ATM AND RAD3-RELATED (ATR). Here we identify important physiological roles for these sensor kinases in control of seed germination. We demonstrate that double-strand breaks (DSBs) are rate-limiting for germination. We identify that desiccation tolerant seeds exhibit a striking transcriptional DSB damage response during germination, indicative of high levels of genotoxic stress, which is induced following maturation drying and quiescence. Mutant atr and atm seeds are highly resistant to aging, establishing ATM and ATR as determinants of seed viability. In response to aging, ATM delays germination, whereas atm mutant seeds germinate with extensive chromosomal abnormalities. This identifies ATM as a major factor that controls germination in aged seeds, integrating progression through germination with surveillance of genome integrity. Mechanistically, ATM functions through control of DNA replication in imbibing seeds. ATM signaling is mediated by transcriptional control of the cell cycle inhibitor SIAMESE-RELATED 5, an essential factor required for the aging-induced delay to germination. In the soil seed bank, seeds exhibit increased transcript levels of ATM and ATR, with changes in dormancy and germination potential modulated by environmental signals, including temperature and soil moisture. Collectively, our findings reveal physiological functions for these sensor kinases in linking genome integrity to germination, thereby influencing seed quality, crucial for plant survival in the natural environment and sustainable crop production.DNA repair | seed vigor | DNA damage response | dormancy cycling | soil seed bank M aintenance of genome integrity is indispensable for cellular survival and transmission of genetic information to the next generation; however, constant exposure of DNA to environmental and cellular oxidative stresses results in damage that can arrest growth and result in mutagenesis or cell death. Consequently, organisms have evolved powerful DNA repair and DNA damage signaling mechanisms. In plants, as in other eukaryotes, the cellular response to DNA damage is orchestrated by the phosphoinositide-3-kinase-related protein kinases (PIKKs) ATAXIA TELANGIECTASIA MUTATED (ATM) and ATM AND RAD3-RELATED (ATR) (1). In response to genotoxic stresses, these checkpoint kinases activate DNA repair factors, delay or halt cell cycle progression, and promote endocycles or programmed cell death (1-4). ATM is activated by double-strand DNA breaks (DSBs), a highly toxic form of DNA damage that results in chromosome fragmentation (1, 5), and plants mutated in ATM display hypersensitivity to DSBs induced by gamma radiation or radiomimetics (6). ATM also mediates a strong transcriptional up-regulation of hundreds of genes, including the SIAMESE/SIAMESE-RELATED cell cycle inhibitors ...