Chryseobacterium camelliae sp. nov., isolated from green tea

Kook, MooChang; Son, Heung-Min; Ngo, Hien T. T.; Yi, Tae–Hoo

doi:10.1099/ijs.0.057398-0

Cited by 20 publications

(11 citation statements)

References 40 publications

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“…The genomic DNA G+C content was determined using the thermal denaturation method (Marmur & Doty, 1962) with the DNA of Escherichia coli K-12 as a control. The polar lipid profile of strain AG1-2 T consisted of phosphatidylethanolamine as the major polar lipid, which is similar to the other type strains of the genus Chryseobacterium (Kook et al , 2014). In addition, several unidentified polar lipids including three aminolipids and two lipids were also detected (Fig.…”

supporting

confidence: 68%

“…An almost complete 16S rRNA gene sequence of strain AG1-2 T (1478 bp) was obtained. Comparative 16S rRNA gene sequence analysis showed that it was phylogenetically affiliated with species belonging to the genus Chryseobacterium and the highest level of similarity was found with Chryseobacterium taiwanense Soil-3-27 T (98.0 %), Chryseobacterium hispalense AG13 T (97.8 %; Montero-Calasanz et al , 2013), Chryseobacterium camelliae THG C4-1 T (97.3 %; Kook et al , 2014) and Chryseobacterium taeanense PHA3-4 T (97.1 %; Park et al , 2006). However, its 16S rRNA gene sequence similarities with Chryseobacterium gregarium P 461/12 T (Behrendt et al , 2008), C. taichungense CC-TWGS1-8 T , Chryseobacterium wanjuense R2A10-2 T (Weon et al , 2006), C. gwangjuense THG-A18 T and C. daeguense K105 T were also high (96.7–96.9 %).…”

mentioning

confidence: 99%

“… * Data from: a , (Tai et al , 2006); b , (Montero-Calasanz et al , 2013); c , (Kook et al , 2014); d , (Park et al , 2006); e , (Behrendt et al , 2008); f , (Weon et al , 2006); g , (Park et al , 2013); h , (Yoon et al , 2007). …”

unclassified

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Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides

Zhao

Chen

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-negative, rod-shaped and non-endospore-forming bacterium, designated strain AG1-2 T , was isolated from Takakia lepidozioides collected from the Gawalong glacier in Tibet,China and characterized using a polyphasic taxonomic approach. The predominant fatty acids of strain AG1-2 T were iso-C 15 : 0 (36.0 %), iso-C 17 : 0 3-OH (20.2 %), summed feature 9 (iso- orange. MK-6 is the major or only respiratory quinone and branched-chain fatty acids iso-C 15 : 0 , iso-C 17 : 0 3-OH and iso-C 17 : 1 v9c are the major fatty acids, and the genomic DNA G+C content is 29-39 mol% (Vandamme et al., 1994; Kämpfer et al., 2009). In this paper, we describe strain AG1-2 T , isolated from a kind of bryophyte, Takakia lepidozioides. The organism was related to the genus Chryseobacterium on the basis of 16S rRNA gene sequence comparison. The phenotypic, genetic and chemotaxonomic analyses showed that it represents a novel species of the genus Chryseobacterium.Samples of the bryophyte Takakia lepidozioides were collected from three representative sites in the Gawalong glacier zone in Tibet, China. About 1 g of surfacedisinfected plants (Li et al., 2011) was homogenized in 0.85 % (w/v) NaCl and serial standard dilutions were spread on trypticase soy agar (TSA; Difco). The plates were incubated at 28 u C for 2-3 days and one yellow-pigmented strain, designated AG1-2 T , was isolated and purified by transfer onto new plates. Strain AG1-2 T was maintained on TSA at 4 uC and preserved at 280 uC in trypticase soy broth (TSB; Difco) containing 30 % (v/v) glycerol. Biomass for chemotaxonomic and molecular systematic studies was prepared by growing the strain in TSB at 28 u C for 2 days. Cells were harvested by centrifugation, and freeze-dried pending analysis.

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confidence: 68%

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confidence: 99%

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Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides

Zhao

Chen

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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“…This was also carried out because no reliable report exists on the absence of PE and presence of phosphatidylglycerol and DPG in species of the Flavobacteriaceae . Furthermore, the presence of several unidentified ALs is widespread among members of this family, including species of the closely related genus Chryseobacterium (Montero-Calasanz et al , 2013; Nguyen et al , 2013; Kämpfer et al , 2003, 2014; Kook et al , 2014). The polar lipid profiles of these three species (Figs 2b–d) were found to be very similar to each other and to that of strain JM-87 T .…”

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confidence: 99%

Elizabethkingia endophytica sp. nov., isolated from Zea mays and emended description of Elizabethkingia anophelis Kämpfer et al. 2011

Kämpfer

Busse²,

McInroy

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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A slightly yellow bacterial strain (JM-87 T), isolated from the stem of healthy 10 day-old sweet corn (Zea mays), was studied for its taxonomic allocation. The isolate revealed Gramstain-negative, rod-shaped cells. A comparison of the 16S rRNA gene sequence of the isolate showed 99.1, 97.8, and 97.4 % similarity to the 16S rRNA gene sequences of the type strains of Elizabethkingia anophelis, Elizabethkingia meningoseptica and Elizabethkingia miricola, respectively. The fatty acid profile of strain JM-87 T consisted mainly of the major fatty acids C 15:0 iso, C 17:0 iso 3-OH, and C 15:0 iso 2-OH/C 16:1 v7c/t. The quinone system of strain JM-87 T contained, exclusively, menaquinone MK-6. The major polyamine was sym-homospermidine. The polar lipid profile consisted of the major lipid phosphatidylethanolamine plus several unidentified aminolipids and other unidentified lipids. DNA-DNA hybridization experiments with E. meningoseptica CCUG 214 T (5ATCC 13253 T), E. miricola KCTC 12492 T (5GTC 862 T) and E. anophelis R26 T resulted in relatedness values of 17 % (reciprocal 16 %), 30 % (reciprocal 19 %), and 51 % (reciprocal 54 %), respectively. These DNA-DNA hybridization results, in addition to some differentiating biochemical properties, clearly indicate that strain JM-87 T is a representative of a novel species, for which the name Elizabethkingia endophytica sp. nov. is proposed. The type strain is JM-87 T (5CIP 110885 T 5 LMG 28604 T 5CCM 8570 T).

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“…Within the last few years, several novel species of the genus Chryseobacterium have been proposed (e.g. Hugo et al , 2003; Kämpfer et al , 2003; 2009, 2010a, b, 2011; Li et al , 2003; de Beer et al , 2005; Kim et al , 2005, 2008; Shen et al , 2005; Shimomura et al , 2005; Young et al , 2005; Park et al , 2006; Tai et al , 2006; Behrendt et al , 2007, 2008; Hantsis-Zacharov et al , 2008; Herzog et al , 2008; Szoboszlay et al , 2008; Weon et al , 2008; Cho et al 2010), with more than 20 species proposed since 2013 (Bajerski et al , 2013; Charimba et al , 2013; Hoang et al , 2013; Holmes et al , 2013; Kirk et al , 2013; Montero-Calasanz et al , 2013, 2014; Nguyen et al , 2013; Park et al , 2013; Sang et al , 2013; Wu et al , 2013; Kämpfer et al , 2014a, b, 2015; Kook et al , 2014; Loch & Faisal, 2014; Venil et al , 2014; Chen et al , 2015; Zhao et al , 2015). Among these species, several were found in close association with plants (Nguyen et al , 2013; Sang et al , 2013; Chen et al , 2014; Kämpfer et al , 2014a, 2015; Montero-Calasanz et al , 2014; Venil et al , 2014; Zhao et al , 2015).…”

mentioning

confidence: 99%

Chryseobacterium arachidiradicis sp. nov., isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea)

Kämpfer

Busse²,

McInroy

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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A yellow-pigmented bacterial strain, 91A-612 T , isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea) in Alabama, USA, was studied for its taxonomic position. Cells of the isolate were rod-shaped and stained Gram-negative. A comparison of the 16S rRNA gene sequence with the sequences of the type strains of the most closely related species showed that the strain belongs to the genus Chryseobacterium, showing the highest sequence similarities to the type strains of Chryseobacterium molle (98.4 %), C. pallidum (98.3 %) and C. hominis (97.8 %). The 16S rRNA gene sequence similarities to the type strains of all other species of the genus Chryseobacterium were below 97.0 %. The fatty acid profile of strain 91A-612 T consisted of the major fatty acids iso-C 15 : 0 , summed feature 3 (iso-C 15 : 0 2-OH/C 16 : 1 v7c) and iso-C 17 : 0 3-OH. Major compounds in the polar lipid profile were phosphatidylethanolamine and several unidentified lipids, including two lipids that did not contain a sugar moiety, an amino group or a phosphate group (L3, L8), and an aminolipid (AL1). The quinone system was composed mainly of MK-6. The polyamine pattern contained sym-homospermidine as the major compound and moderate amounts of spermidine and spermine. DNA-DNA hybridizations between strain 91A-612 T and the type strains of C. molle, C. pallidum and C. hominis resulted in relatedness values well below 70 %. These data and the differentiating biochemical and chemotaxonomic properties showed that isolate 91A-612 T represents a novel species of the genus Chryseobacterium, for which we propose the name Chryseobacterium arachidiradicis sp. nov. (type strain 91A-612 T 5LMG 27814 T 5CCM 8490 T 5CIP 110647 T).

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Chryseobacterium camelliae sp. nov., isolated from green tea

Cited by 20 publications

References 40 publications

Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides

Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides

Elizabethkingia endophytica sp. nov., isolated from Zea mays and emended description of Elizabethkingia anophelis Kämpfer et al. 2011

Chryseobacterium arachidiradicis sp. nov., isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea)

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