Chryseobacterium paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis

Zhang, Zhen; Yang, Ling–Ling; Li, Cong-Jian; Jiang, Xing-Wang; Zhi, Xiao‐Yang

doi:10.1007/s00203-021-02504-2

Cited by 3 publications

(3 citation statements)

References 38 publications

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“…These findings may help to explain the enrichment trends of the three PGPF genera in RS and SS as compared to RT. Additionally, it was discovered in the current investigation that the relative abundance of one PGPR genus Chryseobacterium increased from the outside to the inside of the roots (Figure S10), indicating that the root had an enrichment effect on this PGPF (Zhang et al, 2021). According to (Pieterse et al, 2014;Rudrappa et al, 2008), PGPR epiphytes have a tendency to form biofilms, which are multicellular communities encased inside an extracellular matrix.…”

Section: Adonismentioning

confidence: 69%

The host niches of soybean rather than genetic modification or glyphosate application drive the assembly of root‐associated microbial communities

Yang

Luo

Song

et al. 2022

Microbial Biotechnology

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Plant roots significantly influence soil microbial diversity, and soil microorganisms play significant roles in both natural and agricultural ecosystems.Although the genetically modified (GM) crops with enhanced insect and herbicide resistance are thought to have unmatched yield and stress resistance advantages, thorough and in-depth case studies still need to be carried out in a real-world setting due to the potential effects of GM plants on soil microbial communities. In this study, three treatments were used: a recipient soybean variety Jack, a triple transgenic soybean line JD321, and the glyphosatetreated JD321 (JD321G). Three sampling stages (flowering, seed filling and maturing), as well as three host niches of soybean rhizosphere [intact roots (RT), rhizospheric soil (RS) and surrounding soil (SS)] were established. In comparison to Jack, the rhizospheric soil of JD321G had higher urease activity and lower nitrite reductase at the flowering stage. Different treatments and different sampling stages existed no significant effects on the compositions of microbial communities at different taxonomic levels. However, at the genus level, the relative abundance of three plant growth-promoting fungal genera (i.e. Mortierella, Chaetomium and Pseudombrophila) increased while endophytic bacteria Chryseobacterium and pathogenic bacteria Streptomyces decreased from the inside to the outside of the roots (i.e. RT → RS → SS).Moreover, two bacterial genera, Bradyrhizobium and Ensifer were more abundant in RT than in RS and SS, as well as three species, Agrobacterium radiobacter, Ensifer fredii and Ensifer meliloti, which are closely related to nitrogen-fixation. Furthermore, five clusters of orthologous groups (COGs) associated to nitrogen-fixation genes were higher in RT than in RS, whereas only one COG annotated as dinitrogenase iron-molybdenum cofactor biosynthesis protein was lower. Overall, the results imply that the rhizosphere host

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Section: Adonismentioning

confidence: 69%

The host niches of soybean rather than genetic modification or glyphosate application drive the assembly of root‐associated microbial communities

Yang

Luo

Song

et al. 2022

Microbial Biotechnology

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“…At the time of writing, the genus Chryseobacterium comprises approximately 160 species with validly published names and non-validated names (https://lpsn.dsmz.de/genus/chryseobacterium), and the type species is Chryseobacterium gleum . Species of the genus Chryseobacterium have been isolated from a variety of environments, such as soil, plants, water, raw milk and fish [2–7]. Members of the genus Chryseobacterium are Gram-stain-negative, rod-shaped, non-motile or motile by gliding, non-spore-forming, yellow-orange coloured, and oxidase- and catalase-positive [8, 9].…”

Section: Introductionmentioning

confidence: 99%

Chryseobacterium edaphi sp. nov. and Chryseobacterium gilvum sp. nov., isolated from soil

Jung

Chhetri

Kim

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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Two Gram-stain-negative, aerobic, yellow and rod-shaped bacteria, designated as strains PBS4-4T and GMJ5T, were isolated from soil samples collected in Goyang-si and Paju-si, Gyeonggi-do, Republic of Korea. Strains PBS4-4T and GMJ5T were both positive for catalase and oxidase. Strain PBS4-4T grew at 15–37 °C and pH 5.0–12.0. Strain GMJ5T grew at 15–37 °C and pH 5.0–11.0. Neither strain required NaCl for growth. 16S rRNA sequence analysis revealed that strains PBS4-4T and GMJ5T form a closely related cluster with the genus Chryseobacterium . The average nucleotide identity and digital DNA–DNA hybridization values between strain PBS4-4T and its closely related strains were 79.4–84.5% and 23.2–28.7 %, respectively. For GMJ5T, the values were 78.3–79.3% and 22.0–22.6 %, respectively. The major fatty acids shared by both novel strains were iso-C15 : 0 and summed feature 3 (C16 : 1 ω7c/C16 : 1 ω6c). Strain GMJ5T had one other major fatty acid: iso-C17 : 0 3OH. Based on phenotypic, genomic and phylogenetic results, strains PBS4-4T and GMJ5T represent novel species within the genus Chryseobacterium , and the names Chryseobacterium edaphi sp. nov. and Chryseobacterium gilvum sp. nov. are proposed, respectively. The type strain of C. edaphi is PBS4-4T (=KACC 22882T=TBRC 17052T) and the type strain of C. gilvum is GMJ5T (=KACC 22883T=TBRC 17053T).

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“…gen. fem. 15 The protologue heading should give Eggerthella instead of E. 16 The etymology should state N.L. masc.…”

mentioning

confidence: 99%

Validation List no. 209. Valid publication of new names and new combinations effectively published outside the IJSEM

Oren

Göker

2023

International Journal of Systematic and Evolutionary Microbiology

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Chryseobacterium paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis

Abstract: Read Full LicenseChryseobacterium paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var.

Cited by 3 publications

References 38 publications

The host niches of soybean rather than genetic modification or glyphosate application drive the assembly of root‐associated microbial communities

The host niches of soybean rather than genetic modification or glyphosate application drive the assembly of root‐associated microbial communities

Chryseobacterium edaphi sp. nov. and Chryseobacterium gilvum sp. nov., isolated from soil

Validation List no. 209. Valid publication of new names and new combinations effectively published outside the IJSEM

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