2020
DOI: 10.1101/2020.05.04.075515
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Circumpolar diversification of theIxodes uriaetick virome

Abstract: Ticks (order: Ixodida) are a highly diverse and ecologically important group of ectoparasitic blood-feeding organisms. One such species, the seabird tick (Ixodes uriae), is widely distributed around the circumpolar regions of the northern and southern hemispheres. It has been suggested that Ix. uriae spread from the southern to the northern circumpolar region millions of years ago and has remained isolated in these regions ever since. Such a profound biographic subdivision provides a unique opportunity to dete… Show more

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Cited by 5 publications
(2 citation statements)
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“…The relative abundance of each putative viral sequence was reported as the number of reads per million: that is, the number of reads mapping to the contig divided by the total number of reads of the corresponding SRA library multiplied by one million. Poorlyrepresented viral sequences were considered as potential cross-library contaminants derived from index-hopping and discarded when they accounted for less than 0.1% of the highest abundance of the same sequence in another library 26 .…”
Section: Contig Manual Extension and Genome Annotationmentioning
confidence: 99%
“…The relative abundance of each putative viral sequence was reported as the number of reads per million: that is, the number of reads mapping to the contig divided by the total number of reads of the corresponding SRA library multiplied by one million. Poorlyrepresented viral sequences were considered as potential cross-library contaminants derived from index-hopping and discarded when they accounted for less than 0.1% of the highest abundance of the same sequence in another library 26 .…”
Section: Contig Manual Extension and Genome Annotationmentioning
confidence: 99%
“…However, pathogenic viruses represent only a minor proportion of the virosphere (Geoghegan and Holmes 2017; Middelboe and Brussaard 2017; Zhang, et al 2018; Salazar, et al 2019; Zhang, et al 2019). Advances in meta-genomics and meta-transcriptomics led to the discovery of an enormous amount of viruses, most of which are distinct from presently well-defined pathogenic viruses (Shi, et al 2016; Shi, Lin, et al 2018; Chang, Eden, et al 2020; Chang, Li, et al 2020; Pettersson, et al 2020; Wu, et al 2020). These findings have filled important gaps in virus evolution and reflected the fact that RNA viruses with relatively small genome size could also have huge diversity in genomic elasticity (Qin, et al 2014; Zhang, et al 2018).…”
Section: Introductionmentioning
confidence: 99%