Cathepsin K, a lysosomal papain-like cysteine protease, forms collagenolytically highly active complexes with chondroitin sulfate and represents the most potent mammalian collagenase. Here we demonstrate that complex formation with glycosaminoglycans (GAGs) is unique for cathepsin K among human papain-like cysteine proteases and that different GAGs compete for the binding to cathepsin K. GAGs predominantly expressed in bone and cartilage, such as chondroitin and keratan sulfates, enhance the collagenolytic activity of cathepsin K, whereas dermatan, heparan sulfate, and heparin selectively inhibit this activity. Moreover, GAGs potently inhibit the collagenase activity of other cysteine proteases such as cathepsins L and S at 37°C. Along this line MMP1-generated collagen fragments in the presence of GAGs are stable against further degradation at 28°C by all cathepsins but cathepsin K, whereas thermal destabilization at 37°C renders the fragments accessible to all cathepsins. These results suggest a novel mechanism for the regulation of matrix protein degradation by GAGs. It further implies that cathepsin K represents the only lysosomal collagenolytic activity under physiologically relevant conditions.Controlled degradation of collagen is observed in bone remodeling, wound healing, angiogenesis, and during organ development (1-3). On the other hand excessive collagen degradation leads to pathological phenotypes such as osteoporosis (4), various forms of arthritis (5), or aneurysms of blood vessels (6), or it is characteristic for tumor invasion (7). However, triple helical collagens, in particular type I and II collagens, are highly resistant to general proteolysis and require specific proteases for their degradation. Known mammalian collagenolytic activities include members of the matrix metalloprotease family such as MMP-1, -2, -8, -13, and -14 (8), the serine protease, human neutrophil elastase (9), and thiol-dependent cathepsins (1). Collagenases of the MMP family cleave triple helical collagen at a specific single site and release 3 ⁄4 and 1 ⁄4 fragments. Similar to MMPs, human neutrophil elastase generates 3 ⁄4 fragments from type I collagen but is unable to degrade type II collagen (9). Lysosomal cysteine proteases such as cathepsins L and B have also been discussed as collagenolytic activities, but these data were mostly based on inhibitor experiments in cell extracts or on early preparations of cathepsins, which may not have excluded contaminating activities (10 -13). Thorough enzymatic studies suggested that cathepsins B and L primarily cleave in the non-helical telopeptide extensions of collagens (14, 15). A truly triple helical collagenase activity is found in cathepsin K, which is predominantly expressed in osteoclasts and to a lower degree in various other cell types including fibroblasts (16 -19). It was demonstrated that cathepsin K, similar to the bacterial Clostridium collagenase, cleaves at multiple sites within the triple helical region of types I and II collagens (20,21). The biological relevan...