An experiment was conducted with two-year-old ‘Fino 95’ lemon plants (Citrus limon Burm. f. cv. Fino) grafted on C. macrophylla (Citrus macrophylla Wester) to study the effects of salinity on plants inoculated with arbuscular mycorrhizal fungi (AMF). Half of the inoculated (+AM) and non-inoculated (−AM) plants were irrigated with half-strength Hoagland solution, and the remainder were inoculated with half-strength Hoagland solution + 30 mM NaCl. Ninety-eight days later, results showed that AMF had alleviated the negative effect of salinity on growth. Inoculation with AMF provided some protection against the damage that salinity caused on cellular membranes and improved the plant water status and turgor under saline conditions (Ψx and Π increased by 16% and 48%, respectively). The responses of mineral nutrition to salinity and AMF treatments were complex. P concentrations in the leaves and roots of +AM plants were lower than in those of −AM plants, but inoculation improved Ca2+ (by 20%), Mg2+ (24%), Fe2+ (21%), and Zn2+ (7%) nutrition in roots and also the Mg2+/Na+ ratio in leaves (33%), reducing the antagonistic effect of Na+ on Mg2+ nutrition in salt-treated plants. AMF could protect plants against salt stress through the maintenance of the gas exchange capacity and due to a better antioxidant response. All these positive effects of AMF contributed to mitigating the harmful effects of salinity stress on the plant growth performance of lemon trees grafted on C. macrophylla rootstock under salinity conditions.