bThe second complete genome of bluetongue virus serotype 9 (BTV-9) is presented in this report. The sequence analysis points to continued circulation in India of a mixed topotype virus apparently belonging to the BTV-9 serotype, and it raises questions about approaches for serotyping bluetongue viruses.
Bluetongue virus (BTV) is a 10-segmented double-stranded RNA virus belonging to the genus Orbivirus, family Reoviridae. BTV infects most ruminant species, but the clinical disease is limited to sheep and, to some extent cattle (1-3, 11). Twenty-six serotypes of BTV are recognized (3,5), and the disease is endemic to many countries in Africa and Asia. Isolates from Asia appear to show more diversity, even though sequence information is available for only a few instances. In an effort to understand the diversity and molecular epidemiology for this virus, we recently reported the partial or complete genome analysis of isolates belonging to BTV serotypes 9, 10, and 21 (4, 10, 12). Here we report the complete sequence of the open reading frames of all 10 segments of a second BTV-9 virus. This virus, designated Ind-R1/07, was isolated from the southern state of Andhra Pradesh, India, in the year 2007. In contrast to whole-genome sequencing based on preamplified segments (7-10), we report here the use of next-generation sequencing (Illumina platform) to elucidate the nucleotide sequence information.The serotype of Ind-R1/07 was identified by sequencing. The size of the genome segments of BTV typically range from 822 to 3,944 bp. The 10 segments code for seven structural and five nonstructural proteins. The lengths of these proteins (in residues) in Ind-R1/07 virus are 1,302 (VP1), 955