Apert syndrome (AS) is characterized by craniosynostosis (premature fusion of cranial sutures) and severe syndactyly of the hands and feet. Two activating mutations, Ser-252 3 Trp and Pro-253 3 Arg, in fibroblast growth factor receptor 2 (FGFR2) account for nearly all known cases of AS. To elucidate the mechanism by which these substitutions cause AS, we determined the crystal structures of these two FGFR2 mutants in complex with fibroblast growth factor 2 (FGF2) . These structures demonstrate that both mutations introduce additional interactions between FGFR2 and FGF2, thereby augmenting FGFR2-FGF2 affinity. Moreover, based on these structures and sequence alignment of the FGF family, we propose that the Pro-253 3 Arg mutation will indiscriminately increase the affinity of FGFR2 toward any FGF. In contrast, the Ser-252 3 Trp mutation will selectively enhance the affinity of FGFR2 toward a limited subset of FGFs. These predictions are consistent with previous biochemical data describing the effects of AS mutations on FGF binding. Alterations in FGFR2 ligand affinity and specificity may allow inappropriate autocrine or paracrine activation of FGFR2. Furthermore, the distinct gain-of-function interactions observed in each crystal structure provide a model to explain the phenotypic variability among AS patients.T he fibroblast growth factor receptor (FGFR) signaling pathway is involved in a variety of critical physiological and pathological processes (1). Activating mutations in the extracellular domains of FGFR1-3 are responsible for many human skeletal disorders (2), including the craniosynostosis syndromes (3). The craniosynostosis syndromes are mostly caused by gainof-function mutations in FGFR2 and include Apert syndrome (AS), Crouzon syndrome, Crouzon syndrome with acanthosis nigricans, coronal craniosynostosis, Pfeiffer syndrome, JacksonWeiss syndrome, Antley-Bixler syndrome, and Beare-Stevenson cutis gyrata. AS [ref. 4; Online Mendelian Inheritance in Man database at http:͞͞www3.ncbi.nlm.nih.gov͞omim͞], the most severe of the craniosynostosis syndromes, is unique among the craniosynostosis syndromes in that it is also characterized by severe syndactyly (bony and cutaneous) of the hands and feet. Numerous other anomalies, including central nervous system abnormalities, cardiovascular defects, urogenital anomalies, and dermatologic manifestations, also have been observed in AS patients. Interestingly, statistically significant differences were described for severity of syndactyly and presence of cleft palate between two subgroups of AS patients with Ser-252 3 Trp (Ser252Trp) or Pro-253 3 Arg (Pro253Arg) mutations (5, 6), which account for Ϸ67% and 32% of AS patients (6-9), respectively.Most mutations in the extracellular domain of FGFR2 cause receptor activation by facilitating dimerization. For example, Crouzon syndrome is caused by mutations that create an unpaired cysteine residue either by gain or loss of an ectodomain cysteine residue or by destabilizing disulfide bond formation in Ig-like domain 3 (D3)....