Ants and termites have independently evolved obligate fungus-farming mutualisms, but their gardening procedures are fundamentally different, as the termites predigest their plant substrate whereas the ants deposit it directly on the fungus garden. Fungus-growing termites retained diverse gut microbiota, but bacterial gut communities in fungus-growing leaf-cutting ants have not been investigated, so it is unknown whether and how they are specialized on an exclusively fungal diet. Here we characterized the gut bacterial community of Panamanian Acromyrmex species, which are dominated by only four bacterial taxa: Wolbachia, Rhizobiales, and two Entomoplasmatales taxa. We show that the Entomoplasmatales can be both intracellular and extracellular across different gut tissues, Wolbachia is mainly but not exclusively intracellular, and the Rhizobiales species is strictly extracellular and confined to the gut lumen, where it forms biofilms along the hindgut cuticle supported by an adhesive matrix of polysaccharides. Tetracycline diets eliminated the Entomoplasmatales symbionts but hardly affected Wolbachia and only moderately reduced the Rhizobiales, suggesting that the latter are protected by the biofilm matrix. We show that the Rhizobiales symbiont produces bacterial NifH proteins that have been associated with the fixation of nitrogen, suggesting that these compartmentalized hindgut symbionts alleviate nutritional constraints emanating from an exclusive fungus garden diet reared on a substrate of leaves.
Communities of gut bacteria play key roles in nutrient acquisition, vitamin supplementation, and disease resistance. Their diversity often covaries with host diet, both across lineages with different ecological niches and between conspecific populations in different habitats or geographic regions (1-3). Elucidating the significance of single bacterial taxa in omnivores such as humans is dauntingly complex (3, 4), but insects with specialized diets have regularly offered gut microbiota study systems that are dominated by a limited number of species (5-7). Several insect-microbial symbioses are evolutionarily ancient so that extensive functional complementarity between hosts and symbionts could evolve, as in aphids that rely on Buchnera for the production of essential amino acids (8, 9). Other mutualisms have more recent origins, such as bedbugs that rely on Wolbachia for vitamin B production (10, 11) or wood-eating beetles that carry nitrogen-fixing gut bacteria in order to subsist on protein-poor diets (12).The eusocial insects offer abundant niche space for bacterial symbionts (5, 13-16) because many have peculiar diets and practice liquid food transfer (trophallaxis), which facilitates symbiont transmission within colonies. Higher termites replaced their ancestral protist gut communities by bacterial microbiota (17), while other early studies identified Blochmannia gut symbionts in carpenter ants (18, 19) and a community of gut-pouch symbionts in Tetraponera ants (20, 21). More recently, comparative studies have st...