Five mutants of Penicitlium chrysogenum blocked in penicillin biosynthesis (npe) which are deficient in isopenicillin N-acyltransferase were isolated previously. Three of these mutants, npe6, npe7, and npe8, have been characterized at the molecular level and compared with npelO, a deletion mutant. Transcripts of normal size (1.15 kb) of the penDE genes, which encode isopenicillin N-acyltransferase, and also of the pcbAB (11.5 kb) and pcbC (1.1 kb) genes were observed in all mutants except for the npelO mutant. Immunoblotting studies using antibodies against isopenicillin N-acyltransferase showed that all mutants (except npelO) formed the 40-kDa (unprocessed) protein and the 29-kDa subunit of the isopenicillin N-acyltransferase. The 11-kDa subunit could not be observed in the immunoblots. The mutant penDE genes of strains npe6, npe7, and npe8 were cloned and sequenced. These three strains showed a mutation in the penDE genes which results in a single amino acid change in each modified isopenicillin N-acyltransferase. The mutation in npe6 resulted in a change of Gly-150 to Val, whereas the mutation in both npe7 and npe8 introduced a change of Glu-258 to Lys. Replacement of the Val-150 and Lys-258 mutations by constructing hybrid isopenicillin N-acyltransferase molecules led to the recovery of the isopenicillin Nacyltransferase activity. The mutations in npe6, npe7, and npe8 do not affect the ability of the 40-kDa isopenicillin N-acyltransferase to be processed into the component subunits.Penicillin biosynthesis in filamentous fungi is carried out in three reactions (1,5,9,11,19). The last step involves the exchange of the aL-aminoadipic acid side chain of isopenicillin N (IPN) by phenylacetic acid (activated as phenylacetylcoenzyme A [CoA] or phenylacetylglutathione) (2); this reaction is catalyzed by the enzyme acyl CoA:isopenicillin Nacyltransferase (IAT), encoded by the penDE gene, an enzyme that shows four other related activities (2). The IAT is a heterodimer (3, 28, 32) formed of two subunits of 29 and 11 kDa which are encoded by a single gene, penDE, both in Penicillium chrysogenum (6, 29) and inAspergillus nidulans (21,29). Initial studies indicated that a single transcript of 1.15 kb encoding both subunits was formed, and a 40-kDa form of the IAT was observed in addition to the 29-and 11-kDa subunits, suggesting that a 40-kDa precursor protein is posttranslationally cleaved to form the two subunits (6, 32). The acyl-CoA:6-aminopenicillanic acid acyltransferase activity of IAT has been shown to be associated with the heterodimer (29 + 11 kDa) (28). However, the role of each of the two subunits in catalyzing the five related activities shown by the enzyme remains unclear.We have described previously the isolation (18) and characterization of nine mutants of P. chrysogenum impaired in penicillin biosynthesis (8). Surprisingly, five of the nine mutants (npel, npe4, npe6, npe7, and npe8) were blocked in the last step of penicillin biosynthesis, whereas only one (npe5) was mutated in the unusually large gene p...