The site-specific O-glycosylation of MUC1 tandem repeat peptides from secretory mucin of T47D breast cancer cells was analyzed. After affinity isolation on immobilized BC3 antibody, MUC1 was partially deglycosylated by enzymatic treatment with ␣-sialidase/-galactosidase and fragmented by proteolytic cleavage with the Arg-C-specific endopeptidase clostripain. The PAP20 glycopeptides were isolated by reversed phase high pressure liquid chromatography and subjected to the structural analyses by quadrupole time-offlight electrospray ionization mass spectrometry and to the sequencing by Edman degradation. All five positions of the repeat peptide were revealed as O-glycosylation targets in the tumor cell, including the Thr within the DTR motif. The degree of substitution was estimated to average 4.8 glycans per repeat, which compares to 2.6 glycosylated sites per repeat for the mucin from milk (Mü ller, S., Goletz, S., Packer, N., Gooley, A. A., Lawson, A. M., and Hanisch, F.-G. (1997) J. Biol. Chem. 272, 24780-24793). In addition to a modification by glycosylation, the immunodominant DTR motif on T47D-MUC1 is altered by amino acid replacements (PAPGSTAPAAHGVTSAPESR), which were revealed in about 50% of PAP20 peptides. The high incidence of these replacements and their detection also in other cancer cell lines imply that the conserved tandem repeat domain of MUC1 is polymorphic with respect to the peptide sequence.Due to the structural complexity of O-linked glycans, this characteristic posttranslational modification of mucin peptides is a polygenic regulated phenomenon and hence is prone to multiple, differentiation-dependent alterations. According to numerous reports, mucin O-glycosylation can now be regarded as a diagnostically relevant indicator of tumor-associated changes that are characterized by 1) the de novo expression of novel glycotopes the ectopic or incompatible expression of carbohydrate blood groups, or 2) by deletion/truncation of glycan chains (1).Also, the widely distributed epithelial mucin MUC1 has been described to be aberrantly processed in cancer cells (2-4). In breast cancer, the nonexpression of the core2 enzyme, Gal1-3GalNAc/-6-N-acetylglucosaminyltransferase (5), leads to the truncation of polylactosamine-type chains found on the lactation-associated mucin (6) and to the accumulation of core-type chains (2-4). The preponderance of sialylated core1-trisaccharide on carcinoma-associated MUC1, which can be regarded as a biosynthetic dead end product, has been shown to originate from the simultaneous up-regulation and overexpression of Gal1-3GalNAc/␣-3-sialyltransferase (7). Moreover, not only the chain length of the glycans but also their density has been described to be reduced on breast cancer cell-specific MUC1 (4).Reduced glycosylation has been assumed to permit the immune system access to the peptide core of the tumor-associated mucin (8). The preferred target site for most peptide-specific mouse antibodies generated to the tumor mucin, to synthetic variable number of tandem repeats (V...