Iron atoms adsorbed on a Cu(111) surface and buried under polyphenyl dicarbonitrile molecules exhibit strongly spatial anisotropic Kondo features with directionally dependent Kondo temperatures and line shapes, as evidenced by scanning tunneling spectroscopy. First-principles calculations find nearly full polarization for the half-filled Fe 3d xz and 3d yz orbitals, which therefore can give rise to Kondo screening with the experimentally observed directional dependence and distinct Kondo temperatures. X-ray absorption spectroscopy and X-ray magnetic circular dichroism measurements confirm that the spin in both channels is effectively Kondo-screened. At ideal Fe coverage, these two-orbital Kondo impurities are arranged in a self-assembled honeycomb superlattice. KEYWORDS: Kondo effect, organometallic complex, self-assembly, scanning tunneling spectroscopy, X-ray absorption spectroscopy, X-ray magnetic circular dichroism, density functional theory T he interaction between a magnetic impurity and the conduction electrons of a nonmagnetic host can give rise to a many-body singlet state manifesting itself as a sharp resonance near the Fermi energy (E F ). This is known as Kondo effect 1 and was originally observed in bulk solids containing magnetic impurities. Subsequently, it has been reported for various low-dimensional systems, such as surfaceadsorbed magnetic atoms 2−4 and semiconductor quantum dots. 5,6 In recent years, great attention was devoted also to organic and metal−organic molecules, owing to their potential for single-molecule spintronic applications. 7,8 Moreover, the Kondo effect in molecular systems can be manipulated in a controlled way. In particular, it can be turned on and off by adsorbing atoms or small molecules, 9−13 by detaching peripheral hydrogen atoms, 14 by supramolecular interactions, 15,16 or by modifying the molecular conformation with voltage pulses. 17−19 The study of more complex Kondo systems, for example, those with more than one available screening channel, can give further insight into Kondo physics and possibly lead to different tools for the control of magnetism and spintronics at the nanoscale. To date, however, molecular systems in which more than one orbital can contribute to Kondo screening have rarely been investigated. 20−23 Here, we report on a Kondo effect with two orbital contributions, each of them having distinct Kondo temperature and location, as evidenced by scanning tunneling spectroscopy (STS) measurements. We obtain this system by the combination of magnetic atoms with purely organic molecules; namely, we adsorb Fe atoms under NC-Ph 3 -CN molecules in (NC-Ph 3 -CN) 3 Cu 2 networks on Cu(111). The Kondo effect arises from the presence of two singly occupied Fe d orbitals with different spatial distribution and hybridization with the molecular orbitals, as evidenced by density functional theory (DFT) calculations. The spatial distribution of the Kondo features reflects the anisotropy of the Fe-molecule hybridization. X-ray magnetic circular dichroism...