“…In order to validate our simulations against theoretical expectations, we apply a mean-squared-displacement (MSD) analysis to about five particle trajectories and extract effective lattice diffusion coefficients, D eff , for the particle. We verify that the simulated D eff values satisfy the Lifson-Jackson relation in both one and two dimensions for values of W ranging from 3 to 8 k B T [29,33] [34] and demonstrated a measurement of the effective diffusion coefficient, D eff , of a particle [9]. However, knowledge of D eff alone yields neither the well depth, W, nor the particle's free diffusion coefficient, D, which reflects its hydrodynamic radius, r H .…”