bOut of 3,081 animals studied, 24.9% of pigs, 4.7% of chickens, 6.3% of dogs, 10.5% of cats, and 7.1% of rodents were Staphylococcus aureus positive. Prevalence of methicillin-resistant S. aureus (MRSA) was high in pigs (animals, 21.3%; batches, 46.5%), with all MRSA isolates and most methicillin-sensitive S. aureus isolates belonging to clonal complex 9 (CC9) and being multidrug resistant. The predominant S. aureus CCs among dog and cat isolates were similar. Among rodent isolates, CC398 predominated, with spa t034 the most frequent spa type detected.
Staphylococcus aureus is a major pathogen in human and veterinary medicine (3,4,14). Since 2005, there has been a marked increase in methicillin-resistant S. aureus (MRSA) among farm animals, especially pigs (14). These MRSA isolates belong to specific clones (sequence type 9 [ST9] and ST398) and are often resistant to other non--lactam antibiotics (14). However, limited studies have been performed to compare the clonal structures of methicillin-sensitive S. aureus (MSSA) and MRSA populations in food animals and other animals. Here, we investigated the prevalence of MRSA and MSSA among various animals and the strains were characterized by molecular methods. From September 2008 to August 2011, nasal or tracheal swabs were obtained from animals in a central slaughterhouse (cattle and pigs), wet markets (chickens), and urban areas (stray dogs, stray cats, and wild rodents) (6). chromID MRSA (bioMérieux, France) and mannitol salt agar plates were used for the recovery of S. aureus isolates, following an overnight broth enrichment step (5). The bacterium was identified as S. aureus by PCR methods based on an S. aureus chromosomal fragment (sau) (11). The PCR assay could distinguish S. aureus from other closely related species (11). Isolates from cats and dogs were further tested by a multiplex PCR method based on the thermonuclease (nuc) gene, allowing separation from the newly described Staphylococcus pseudointermedius (16). The disc diffusion method was used for susceptibility testing according to the CLSI (2). The isolates were characterized by spa typing, multilocus sequence typing (MLST), and staphylococcal cassette chromosome mec (SCCmec) typing as described previously (5, 8). PCR assays were used to detect the macrolide, lincosamide, and streptogramin B (MLS) resistance determinants (ermA, ermB, ermC, and mefA and mefE) and two virulence genes (pvl and arcA) (5,7,8).In total, 3,081 animals, including 609 cats, 660 chickens, 589 dogs, 310 cattle, 305 pigs, and 608 rodents (281 Rattus norvegicus, 22 Rattus rattus, 151 Rattus andamanensis, 100 Niviventer fulvescens, and 54 unidentified species), were cultured (Table 1). Overall, 24.9% of pigs, 4.7% of chickens, 6.3% of dogs, 10.5% of cats, and 7.1% of rodents were S. aureus positive. A total of 254 S. aureus isolates, including 188 MSSA and 66 MRSA isolates, were recovered from 252 animals ( Table 2). All but one of the isolates from chickens and pigs were resistant to three or more non--lactam drugs. In contrast...