2006
DOI: 10.1007/s00248-006-9120-2
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Community Structure of Actively Growing Bacterial Populations in Plant Pathogen Suppressive Soil

Abstract: The bacterial community in soil was screened by using various molecular approaches for bacterial populations that were activated upon addition of different supplements. Plasmodiophora brassicae spores, chitin, sodium acetate, and cabbage plants were added to activate specific bacterial populations as an aid in screening for novel antagonists to plant pathogens. DNA from growing bacteria was specifically extracted from the soil by bromodeoxyuridine immunocapture. The captured DNA was fingerprinted by terminal r… Show more

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Cited by 64 publications
(52 citation statements)
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“…(Amersham Biosciences). The efficiency of restriction digestion was confirmed by agarose gel electrophoresis, and the digested fragments were separated on an ABI 3700 capillary sequencer, as described previously (16). The sizes of the fluorescently labeled fragments were determined by comparison with the internal GS ROX-500 size standard (ABI).…”
Section: Methodsmentioning
confidence: 99%
“…(Amersham Biosciences). The efficiency of restriction digestion was confirmed by agarose gel electrophoresis, and the digested fragments were separated on an ABI 3700 capillary sequencer, as described previously (16). The sizes of the fluorescently labeled fragments were determined by comparison with the internal GS ROX-500 size standard (ABI).…”
Section: Methodsmentioning
confidence: 99%
“…Terminal-restriction fragment length polymorphism PCR products were digested with the HaeIII restriction enzyme (GE Healthcare, Uppsala, Sweden) and the digested fragments were separated on an ABI 3700 capillary sequencer (ABI Applied Biosystems, Foster City, CA, USA), as described previously (Hjort et al, 2007). The sizes of the fluorescently labeled fragments were determined by comparison with the internal GS ROX-500 size standard (ABI).…”
Section: Patient Cohortmentioning
confidence: 99%
“…Unfortunately, the importance of rhizosphere microbial diversity is almost unknown. More recently, there is an increasing interest in the analysis of soil microbial community structure [7,8]. Among different methods, Random Amplified Polymorphic DNA (RAPD), has been widely used in species classification and phylogenetic analysis [9], species identification [10], and genetic analysis of populations [11].…”
Section: Introductionmentioning
confidence: 99%