Infrared spectroscopy is being increasingly utilized for the analysis of peptides and proteins because it probes the universally available amide (peptide) bonds, which display distinct IR signals for differently folded peptides and proteins. Other spectroscopic techniques useful for studying protein structures in solutions are circular dichroism (CD), ultraviolet absorption and fluorescence spectroscopy, Raman and nuclear magnetic resonance (NMR). Among the techniques for secondary structure, NMR and Raman spectroscopy need unusually high concentration of proteins, and NMR analysis is still limited to small proteins of about 200 amino acid residues. CD analysis is limited to clear protein solution (as opposed to membrane proteins) due to the problem with light scattering. Furthermore, for estimation of secondary structure of protein by CD accurate protein concentration is needed. Infrared spectroscopy is an emerging technique for protein analysis. Amide I, II and III are most commonly used IR spectral regions used for protein structure-function analysis. Recent advances in the development of instrumentation (Fourier transformation, sampling), protein IR data bank (band assignments to different components of secondary structure), and techniques (two-dimensional IR methods, time-resolution, and isotopic labeling) have significantly augmented IR spectroscopy as an analytical tool for peptides and proteins. This chapter provides an overview of the basic technique and some of the applications of IR spectroscopy to examine structure, interaction, and conformational changes in peptides and proteins.