The complement system, a major arm of the humoral innate immune system, comprises a cascade of sequentially activated proteases directed at the elimination of pathogens. Deposition of complement components on pathogen surfaces, either directly, or via surfacebound antibodies induces a proteolytic cascade that generates multiple pro-inflammatory protein fragments with diverse functions: Direct cell lysis, chemoattraction and activation of innate immune effector cells, and opsonization, that is, facilitation of pathogen removal by phagocytic cells. As the complement system is a rapid and amplified pro-inflammatory effector system, it needs to be tightly controlled to prevent aberrant and destructive activation. Primary failure of these control mechanisms due to mutations of complement regulators, gain-of function mutations in components of the protease cascade or secondary activation of the complement system due to autoantibodies that stabilize activating complement proteases or neutralize complement regulators or are directed at "self" antigens, all lead to devastating auto-inflammatory diseases.