The carbene precursor 3-azi-1-[([6-3 H]-2-acetamido-2-deoxy-1--D-galactopyranosyl)thio]-butane (also designated [3 H]-1-ATB-GalNAc) has been used as a photoaffinity label for human lysosomal -hexosaminidase B (Hex B, EC 3.2.1.52) purified to apparent homogeneity from postmortal liver. [ 3 H]-1-ATB-GalNAc behaved as an active site-directed inhibitor, which bound covalently to Hex B upon photolysis at 350 nm and resulted in 15% inactivation of enzyme activity. Up to 75% of the inactivation of Hex B was prevented by including the competitive inhibitor 2-acetamido-2-deoxy-D-glucono-1,5-lactone in the photoaffinity experiment. Incubation of [ 3 H]-1-ATB-GalNAc with the enzyme followed by irradiation and subsequent separation of the three polypeptides composing the -subunit led mainly to labeling of the  a -polypeptide. Subsequent proteolysis of  a with trypsin and separation of the resulting peptides by high pressure liquid chromatography yielded one prominently labeled peptide fraction. Edman degradation resulted in the sequence E 339 ISEVFPDQFIHLGGD-EVEFK 359 . However, no modified amino acid was detected, indicating that the photoaffinity label was presumably bound to the peptide by a labile ester linkage. This was proven when the radiolabel was almost completely released from the peptide by treatment with aqueous ammonium hydroxide. Simultaneously, Glu-355 was converted into Gln-355, which is located within a region of Hex B that shows considerable homology with the ␣-subunit of human hexosaminidase A and other hexosaminidases from various species.Human lysosomal hexosaminidases (EC 3.2.1.52) release terminal -glycosidically linked N-acetylglucosamine and N-acetylgalactosamine residues from a number of glycoconjugates. They are involved in the intracellular degradation of glycolipids, like ganglioside G M2 , 1 its asialo derivative G A2 , and globoside, as well as in the degradation of carbohydrate chains of glycoproteins, glycosaminoglycans, and oligosaccharides (for review see Refs. 1 and 2).The major isoenzymes -hexosaminidase A and -hexosaminidase B (Hex B) 2 are composed of two noncovalently linked subunits of nearly equal molecular mass. -Hexosaminidase A is a heterodimer (␣), whereas Hex B is a homodimer of two -chains () (3). The homodimer ␣␣, also called -hexosaminidase S, has been detected in patients with Sandhoff's disease and seems to be unstable under normal conditions (4, 5). The mature ␣-chain is composed of a major ␣-polypeptide (M r ϭ ϳ54,000) and a minor polypeptide ␣ p (M r ϭ ϳ6,000). The mature -subunit originates from its precursor by two proteolytic cleavage events forming a small  p -polypeptide (M r ϭ ϳ11,000), the  b -chain (M r ϭ ϳ24,000), and the  a -chain (M r ϭ ϳ28,000). In the mature -subunit all 3 chain components are linked by disulfide bonds (6 -10). Dimerization of the subunits ␣ and  or  and  is essential for catalytic activity of human -hexosaminidase A and B, respectively (11). Each subunit possesses an active site that differs in its substrate specific...