Complete Genome Sequence of Oceanimonas sp. GK1, a Halotolerant Bacterium from Gavkhouni Wetland in Iran

Yeganeh, Laleh Parsa; Azarbaijani, Reza; Sarikhan, Sajjad; Mousavi, H A Ebrahimzadeh; Ramezani, Mohadeseh; Amoozegar, Mohammad Ali; Fazeli, Seyed Abolhassan Shahzadeh; Salekdeh, Ghasem Hosseini

doi:10.1128/jb.00023-12

Cited by 15 publications

(6 citation statements)

References 13 publications

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…We did not find any differences in the promoter sequence between trh and tdhS of RIMD2210633, as reported before [36]. Recently, the whole-genome of Oceanimonas (strain GK1) belonging to the family Aeromonadaceae has been sequenced and a tdh gene has been detected in the chromosome [41]. The protein sequence of TDH matched with a TDH of Aeromonas spp., but not with the TDH of V. parahaemolyticus .…”

Section: Resultssupporting

confidence: 82%

Phylogenetic andIn SilicoFunctional Analyses of Thermostable-Direct Hemolysin andtdh-Related Encoding Genes inVibrio parahaemolyticusand Other Gram-Negative Bacteria

Bhowmik

Pazhani

Ramamurthy

2014

BioMed Research International

View full text Add to dashboard Cite

Emergence and spread of pandemic strains of Vibrio parahaemolyticus have drawn attention to make detailed study on their genomes. The pathogenicity of V. parahaemolyticus has been associated with thermostable-direct hemolysin (TDH) and/or TDH-related hemolysin (TRH). The present study evaluated characteristics of tdh and trh genes, considering the phylogenetic and in silico functional features of V. parahaemolyticus and other bacteria. Fifty-two tdh and trh genes submitted to the GenBank were analyzed for sequence similarity. The promoter sequences of these genes were also analyzed from transcription start point to −35 regions and correlated with amino acid substitution within the coding regions. The phylogenetic analysis revealed that tdh and trh are highly distinct and also differ within the V. parahaemolyticus strains that were isolated from different geographical regions. Promoter sequence analysis revealed nucleotide substitutions and deletions at −18 and −19 positions among the pandemic, prepandemic, and nonpandemic tdh sequences. Many amino acid substitutions were also found within the signal peptide and also in the matured protein region of several TDH proteins as compared to TDH-S protein of pandemic V. parahaemolyticus. Experimental evidences are needed to recognize the importance of substitutions and deletions in the tdh and trh genes.

show abstract

Section: Resultssupporting

confidence: 82%

Phylogenetic andIn SilicoFunctional Analyses of Thermostable-Direct Hemolysin andtdh-Related Encoding Genes inVibrio parahaemolyticusand Other Gram-Negative Bacteria

Bhowmik

Pazhani

Ramamurthy

2014

BioMed Research International

View full text Add to dashboard Cite

show abstract

“…A diverse taxa of halophilic and halotolerant bacteria have been recovered from a wide variety of hypersaline environments ( 1 – 6 ). The isolation and characterization of halophilic and halotolerant bacteria from hypersaline environments could provide interesting insights into their evolutionary and survival mechanisms, including the study of halotolerant genes ( 7 , 8 ). These organisms have also been studied with respect to their use in production of useful biomolecules, such as osmolytes (compatible solutes), hydrolytic enzymes, and exopolysaccharides ( 9 ).…”

Section: Genome Announcementmentioning

confidence: 99%

Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India

et al. 2015

View full text Add to dashboard Cite

show abstract

“…As far as the other genera in the family are concerned, only one genome of Oceanimonas sp. (Yeganeh et al 2012) is currently available.…”

Section: Genome Featuresmentioning

confidence: 98%

“…strain GK1 isolated from wetland (Yeganeh et al 2012). This strain contained a 3.51 Mb chromosome and two plasmids of 8.4 and 4.2 kb, together containing 111 structural RNAs and 2.516 nonhypothetical protein and 711 hypothetical protein-coding sequences.…”

Section: A Aeromonasmentioning

confidence: 99%

The Family Aeromonadaceae

Huys¹

2014

The Prokaryotes

View full text Add to dashboard Cite

Complete Genome Sequence of Oceanimonas sp. GK1, a Halotolerant Bacterium from Gavkhouni Wetland in Iran

Cited by 15 publications

References 13 publications

Phylogenetic andIn SilicoFunctional Analyses of Thermostable-Direct Hemolysin andtdh-Related Encoding Genes inVibrio parahaemolyticusand Other Gram-Negative Bacteria

Phylogenetic andIn SilicoFunctional Analyses of Thermostable-Direct Hemolysin andtdh-Related Encoding Genes inVibrio parahaemolyticusand Other Gram-Negative Bacteria

Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India

The Family Aeromonadaceae

Contact Info

Product

Resources

About