Complete genome sequence of Streptomyces fulvissimus

Myronovskyi, Maksym; Tokovenko, Bogdan; Manderscheid, Niko; Petzke, Lutz; Luzhetskyy, Andriy

doi:10.1016/j.jbiotec.2013.08.013

Cited by 31 publications

(23 citation statements)

References 12 publications

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“…Streptomyces exfoliatus DSMZ 41693 (Martínez et al, 2014) Degrades poly(3-hydroxyalkanoate). Streptomyces fulvissimus DSM 40593 (Myronovskyi et al, 2013) Produces the ionophore antibiotic valinomycin. Streptomyces gancidicus BKS 13-15 Not known.…”

Section: Species and Strain Motivation For Sequencingmentioning

confidence: 99%

Recently published Streptomyces genome sequences

Harrison

Studholme

2014

Microbial Biotechnology

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Section: Species and Strain Motivation For Sequencingmentioning

confidence: 99%

Recently published Streptomyces genome sequences

Harrison

Studholme

2014

Microbial Biotechnology

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“…For example, the genomes of S. griseus and S. avermitilis contain 34 and 30 secondary metabolite clusters, respectively [18]. Some of them are cryptic [9,11]. We assume that the strain S. globisporus 1912 has a high potential to produce secondary metabolites because its genome may also contain several biosynthetic gene clusters.…”

Section: Resultsmentioning

confidence: 99%

“…With the emergence of data indicating that most Streptomycetes contain up to 30 gene clusters involved in the synthesis of secondary metabolites, it has become clear that their biosynthetic potential is underestimated [3,8,9,11,12]. Nowadays many efforts are made to estimate this potential and to get access to the natural products, the biosynthetic pathways of which are encoded in the genomes of the corresponding Streptomyces strains [13][14][15].…”

Section: Issn 1993-6842 (On-line); Issn 0233-7657 (Print)mentioning

confidence: 99%

“…Nowadays many efforts are made to estimate this potential and to get access to the natural products, the biosynthetic pathways of which are encoded in the genomes of the corresponding Streptomyces strains [13][14][15]. The accumulation of high quality genome sequencing data will strongly contribute to implementation of this task [3,4,[6][7][8][9][10][11].…”

Section: Issn 1993-6842 (On-line); Issn 0233-7657 (Print)mentioning

confidence: 99%

See 1 more Smart Citation

Similarity and dissimilarity of primary structures of some Streptomyces spp. genomes and the Streptomyces globisporus 1912-2 chromosomal DNA.

Polishchuk¹

2017

Biopolym. Cell

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Aim.To determine the similarity and dissimilarity of the nucleotide sequences of the S. globisporus 1912-2 chromosome and primary structures of genomes of some Streptomycetes strains. Methods. NCBI tools (BLAST: blastn and bl2seq: megablast) and Internet NCBI databases (Genome, Nucleotide) were used for in silico analysis of the primary structure contigs of S. grlobisporus 1912-2. Results. A few strains with significant identity of their DNA primary structures to the nucleotide sequences of the chromosomal DNA of S. globisporus 1912-2 (identity 88-97 %) and a degree of query cover (55-82 %) were identified. Primary structures of genomes of the strains S. globisporus C-1027 and S. griseus NBRC13350 were chosen as most identical to the nucleotide sequence of the S. globisporus 1912-2 chromosomal DNA. No fragments with a homologous primary structure to seven S. globisporus 1912-2 contigs were found in Streptomycetes spp. from the NCBI databases. Conclusions. S. globisporus 1912-2 strain is a member of the S. griseus clade. We detected a high biosynthetic potential of the strain S. globisporus 1912-2 due to many unique nucleotide sequences. K e y w o r d s:Streptomyces, primary structure, genome, identity, in silico analysis, clade.

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“…In comparison, the genomes of S. coelicolor (7), S. fulvissimus (8), and K. albida (9) contain 20, 30, and 46 secondary metabolism gene clusters, respectively.…”

Section: Genome Announcementmentioning

confidence: 99%