Complete mitochondrial genome of brownstripe red snapper, <i>Lutjanus vitta</i> (Perciformes: Lutjanidae)

Andriyono, Sapto; Alam, Md. Jobaidul; Kwak, Donghee; Kim, Hyun-Woo

doi:10.1080/23802359.2018.1521309

Cited by 7 publications

(6 citation statements)

References 5 publications

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“…The control region was observed between tRNA- Pro and tRNA- Phe , while the O L was located between tRNA Asn and tRNA Cys at the WANCY tRNA cluster similar to other fish species (Andriyono et al. 2018 ; Dong et al. 2017 ).…”

supporting

confidence: 55%

“…The phylogenetic tree was constructed by MEGA7 with the Minimum Evolution (ME) algorithm (Kumar et al 2016) The complete circular mitogenome of C. dewitti (MN104591) was 17,452 bp in length, which consisted of 13 protein-coding genes, 22 tRNAs, and two ribosomal RNAs (12S and 16S). The control region was observed between tRNA-Pro and tRNA-Phe, while the O L was located between tRNA Asn and tRNA Cys at the WANCY tRNA cluster similar to other fish species (Andriyono et al 2018;Dong et al 2017). Except for the tRNA Ser-GCT , all the other 21 tRNAs were predicted to be folded into the typical clover-leaf structures.…”

mentioning

confidence: 78%

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Characterization of the complete mitochondrial genome of Chionobathyscus dewitti (Perciformes, Channichthyidae)

Andriyono

Alam

Lee

et al. 2019

Mitochondrial DNA Part B

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The complete mitochondrial genome sequence of the Icefish, Chionobathyscus dewitti was determined by the Next Generation Sequencing (NGS) analysis. The complete mitogenome was 17,452 bp in length, which encoded the canonical 13 protein-coding genes, 22 tRNAs, two rRNAs, and two non-coding regions. As shown in the other notothenids, translocation of ND6 and an additional non–coding region were identified, which is different from the typical vertebrate mitochondrial genomes. The C. dewitti was clustered distinctly from the those in the Chinodraco and Chaenocephalus , which supported the idea that this species should be classified in the different genus, Chionobathyscus in the family Channichthyidae.

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supporting

confidence: 55%

mentioning

confidence: 78%

Characterization of the complete mitochondrial genome of Chionobathyscus dewitti (Perciformes, Channichthyidae)

Andriyono

Alam

Lee

et al. 2019

Mitochondrial DNA Part B

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“…Two ribosomal RNAs (12S rRNA and 16S rRNA) were located between tRNA-Phe (GAA) and tRNA-Leu (TAA) . The non-coding region (OL) and D-Loop was identified between tRNA-Asn and tRNA-Cys at WANCY cluster and between tRNA-Pro and tRNA-Phe, respectively, as shown in the mitogenome of its relative, Lutjanus vitta (Andriyono et al 2018).…”

mentioning

confidence: 99%

The complete mitochondrial genome of black-spot snapper, Lutjanus fulviflamma (Perciformes: Lutjanidae)

Andriyono

Sektiana

Alam

et al. 2019

Mitochondrial DNA Part B

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The complete mitochondrial genome sequence of Dory snapper, Lutjanus fulviflamma, was determined by high-throughput sequencing (HTS) technique. The circular mitogenome of L. fulviflamma was 16,512 bp in length encoding 37 genes (13 proteins, 22 tRNAs, 2 ribosomal RNAs) and 2 conserved noncoding elements; the control region (D-Loop) and the origin of light strand synthesis (OL). Among the protein-coding genes, unusual start codons were identified in ND2, COX1 and ND3 genes and incomplete stop codons were identified in seven genes. Phylogenetic analysis with the currently known mitogenomes in genus Lutjanus revealed that L. fulviflamma was most closely related to Lutjanus russellii with 91% sequence identity. ARTICLE HISTORY

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“…The molecular characterization of fish samples using COI gene sequences and the phylogeny, as revealed in this study, represents one of the most comprehensive phylogenetic coverages of Lutjanus species (33 species) compared with other phylogenetic studies on Lutjanus [47][48][49][50]; however, it could not cover every species of Lutjanus due to limited genetic information of the existing species (n = 180). The strongly supported phylogenetic positions of L. bohar and L. argentimaculatus showed the reliability of this molecular tool in the identification of CFP-related fish species.…”

Section: Discussionmentioning

confidence: 99%

Identification of Fish Species and Toxins Implicated in a Snapper Food Poisoning Event in Sabah, Malaysia, 2017

Dao

Uesugi

Uchida

et al. 2021

Toxins

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In the coastal countries of Southeast Asia, fish is a staple diet and certain fish species are food delicacies to local populations or commercially important to individual communities. Although there have been several suspected cases of ciguatera fish poisoning (CFP) in Southeast Asian countries, few have been confirmed by ciguatoxins identification, resulting in limited information for the correct diagnosis of this food-borne disease. In the present study, ciguatoxin-1B (CTX-1B) in red snapper (Lutjanus bohar) implicated in a CFP case in Sabah, Malaysia, in December 2017 was determined by single-quadrupole selected ion monitoring (SIM) liquid chromatography/mass spectrometry (LC/MS). Continuous consumption of the toxic fish likely resulted in CFP, even when the toxin concentration in the fish consumed was low. The identification of the fish species was performed using the molecular characterization of the mitochondrial cytochrome c oxidase subunit I gene marker, with a phylogenetic analysis of the genus Lutjanus. This is the first report identifying the causative toxin in fish-implicated CFP in Malaysia.

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Complete mitochondrial genome of brownstripe red snapper, Lutjanus vitta (Perciformes: Lutjanidae)

Cited by 7 publications

References 5 publications

Characterization of the complete mitochondrial genome of Chionobathyscus dewitti (Perciformes, Channichthyidae)

Characterization of the complete mitochondrial genome of Chionobathyscus dewitti (Perciformes, Channichthyidae)

The complete mitochondrial genome of black-spot snapper, Lutjanus fulviflamma (Perciformes: Lutjanidae)

Identification of Fish Species and Toxins Implicated in a Snapper Food Poisoning Event in Sabah, Malaysia, 2017

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