Comprehensive analysis of chloroplast genome of Albizia julibrissin Durazz. (Leguminosae sp.)

Zhang, Jing; Huang, Hong-Yuan; Qu, Changqing; Meng, Xiaoxi; Meng, Fancheng; Yao, Xiaoyan; Wu, Jing; Guo, Xiaohu; Baoyu, Han; Xing, Shihai

doi:10.1007/s00425-021-03812-z

Cited by 14 publications

(10 citation statements)

References 67 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The highest value of RSCU was UUA (1.82), and the lowest was AGC (0.315). The RSCU value of 32 codons was greater than 1.00, of which 28 codon bases ended in A or U, and the remaining four ended in G. Similar to Albizia julibrissin , 41 the G or C terminal codons were used more frequently than expected (RSCU value < 1). And in P. asiatica , the stop codons preferred the use of TAA.…”

Section: Resultsmentioning

confidence: 85%

Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae)

Zhang

Guo

et al. 2023

Plant Signaling & Behavior

Self Cite

View full text Add to dashboard Cite

Plantago asiatica L. is a representative individual species of Plantaginaceae, whose high reputation is owed to its edible and medicinal values. However, the phylogeny and genes of the P. asiatica chloroplast have not yet been well described. Here we report the findings of a comprehensive analysis of the P. asiatica chloroplast genome. The P. asiatica chloroplast genome is 164,992 bp, circular, and has a GC content of 37.98%. The circular genome contains 141 genes, including 8 rRNAs, 38 tRNAs, and 95 protein-coding genes. Seventy-two simple sequence repeats are detected. Comparative chloroplast genome analysis of six related species suggests that a higher similarity exists in the coding region than the non-coding region, and differences in the degree of preservation is smaller between P. asiatica and Plantago depressa than among others. Our phylogenetic analysis illustrates P. asiatica has a relatively close relationship with P. depressa , which was also divided into different clades with Plantago ovata and Plantago lagopus in the genus Plantago . This analysis of the P. asiatica chloroplast genome contributes to an improved deeply understanding of the evolutionary relationships among Plantaginaceae.

show abstract

Section: Resultsmentioning

confidence: 85%

Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae)

Zhang

Guo

et al. 2023

Plant Signaling & Behavior

Self Cite

View full text Add to dashboard Cite

show abstract

“…The high-variation hotspots identified in this study could serve as a potential resource for developing molecular markers for phylogenetic analysis and identification of species in the Celastraceae family. The results of codon usage indicated that the chloroplast genome third codon of 13 Celastraceae species had an A/T base preference, which is similar to that of the Lauraceae [ 3 ] and Leguminosae [ 70 ] families as well as other plants.…”

Section: Discussionmentioning

confidence: 89%

Cold Resistance of Euonymus japonicus Beihaidao Leaves and Its Chloroplast Genome Structure and Comparison with Celastraceae Species

Cai

et al. 2022

Plants

View full text Add to dashboard Cite

Euonymus japonicus Beihaidao is one of the most economically important ornamental species of the Euonymus genus. There are approximately 97 genera and 1194 species of plants worldwide in this family (Celastraceae). Using E. japonicus Beihaidao, we conducted a preliminary study of the cold resistance of this species, evaluated its performance during winter, assembled and annotated its chloroplast genome, and performed a series of analyses to investigate its gene structure GC content, sequence alignment, and nucleic acid diversity. Our objectives were to understand the evolutionary relationships of the genus and to identify positive selection genes that may be related to adaptations to environmental change. The results indicated that E. japonicus Beihaidao leaves have certain cold resistance and can maintain their viability during wintering. Moreover, the chloroplast genome of E. japonicus Beihaidao is a typical double-linked ring tetrad structure, which is similar to that of the other four Euonymus species, E. hamiltonianus, E. phellomanus, E. schensianus, and E. szechuanensis, in terms of gene structure, gene species, gene number, and GC content. Compared to other Celastraceae species, the variation in the chloroplast genome sequence was lower, and the gene structure was more stable. The phylogenetic relationships of 37 species inferred that members of the Euonymus genus do not form a clade and that E. japonicus Beihaidao is closely related to E. japonicus and E. fortunei. A total of 11 functional positive selected genes were identified, which may have played an important role in the process of Celastraceae species adapting to environmental changes. Our study provides important genetic information to support further investigations into the phylogenetic development and adaptive evolution of Celastraceae species.

show abstract

“… 2021 ); Albizia julibrissin NC 058305.1 (Zhang et al. 2021 ); Cassia fistula ON099431.1 (Sharma et al. 2021 ).…”

Section: Resultsmentioning

confidence: 99%

The complete chloroplast genome of Crataegus scabrifolia (Franch.) Rehd (Rosaceae), a medicinal and edible plant in Southwest China

Tian

Zhao

2023

Mitochondrial DNA Part B

View full text Add to dashboard Cite

Crataegus scabrifolia (Franch.) Rehd is a medicinal and edible plant in Southwest China. The chloroplast genome of C. scabrifolia was analyzed by high-throughput sequencing technology, and its genetic relationship to related species was discussed. The chloroplast genome is 159,637 bp long, with two inverted repeat (IR) regions (26,384 bp each) that separate a large single-copy (LSC) region (87,730 bp) and a small single-copy (SSC) region (19,139 bp). A total of 127 genes were annotated, including 83 protein-coding genes, 8 rRNA genes, and 36 tRNA genes. The phylogenetic tree shows that C. hupehensis is closely related to C. scabrifolia with strong bootstrap support.

show abstract

Comprehensive analysis of chloroplast genome of Albizia julibrissin Durazz. (Leguminosae sp.)

Cited by 14 publications

References 67 publications

Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae)

Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae)

Cold Resistance of Euonymus japonicus Beihaidao Leaves and Its Chloroplast Genome Structure and Comparison with Celastraceae Species

The complete chloroplast genome of Crataegus scabrifolia (Franch.) Rehd (Rosaceae), a medicinal and edible plant in Southwest China

Contact Info

Product

Resources

About