Magmatic and metasomatic zircon occurs in many alkaline igneous rocks and both are potential economic reservoirs of Zr, and in some places, rare-earth elements. The Baerzhe deposit in China is an example of a system where both types of zircon occur. Previous studies recognized deuteric and variably altered magmatic zircon in a transsolvus miaskitic granite, as well as four types of metasomatic zircon in a transsolvus agpaitic granite. In this study, the relationships among, and origins of, zircon and how these relate to models for rare-metal mineralization are assessed. In-situ back-scattered electron (BSE) and cathodoluminescence (CL) imaging, Raman spectroscopy (including mapping), and chemistry of zircon from the agpaitic granite were conducted, combined with evaluation of published data on zircon from Baerzhe. Their textural, spectroscopic, and chemical characteristics suggest that the four types of metasomatic zircon in the agpaitic granite were not subjected to metamictization or intense alteration, with traceelement accommodation largely following a xenotime substitution mechanism. The most abundant type of metasomatic zircon in the agpaitic granite occurs in zircon-quartz pseudomorphs and exhibits comparable CL, Raman spectral, and chemical features to rare zircon