Cluster‐like collective cell migration of fibroblasts is one of the main factors of adhesion in injured tissues. In this research, a microdot biomaterial system was constructed using α‐helical polypeptide nanoparticles and anti‐inflammatory micelles, which were prepared by ring‐opening polymerization of α‐amino acids‐N‐carboxylic anhydrides (NCAs) and lactide, respectively. The microdot biomaterial system slowly released functionalized polypeptides targeting mitochondria and promoting the influx of extracellular calcium ions under the inflammatory environment, thus inhibiting the expression of N‐cadherin mediating cell‐cell interaction, and promoting apoptosis of cluster fibroblasts, synergistically inhibiting the migration of fibroblast clusters at the site of tendon injury. Meanwhile, the anti‐inflammatory micelles in the microdot biomaterial system were celecoxib (Cex) solubilized by PEG/polyester, which could improve the inflammatory microenvironment at the injury site for a long time. In vitro, the microdot biomaterial system could effectively inhibit the migration of the cluster fibroblasts by inhibiting the expression of N‐cadherin between cell‐cell and promoting apoptosis. In vivo, the microdot biomaterial system could promote apoptosis while achieving long‐acting anti‐inflammation effects, and reduce the expression of vimentin and α‐smooth muscle actin in fibroblasts. Thus, this microdot biomaterial system provided new ideas for the prevention and treatment of tendon adhesion by inhibiting the cluster migration of fibroblasts.This article is protected by copyright. All rights reserved