Targets of the tandem Gcn4 acidic activation domains in transcription preinitiation complexes were identified by site-specific cross-linking. The individual Gcn4 activation domains cross-link to three common targets, Gal11/Med15, Taf12, and Tra1, which are subunits of four conserved coactivator complexes, Mediator, SAGA, TFIID, and NuA4. The Gcn4 N-terminal activation domain also cross-links to the Mediator subunit Sin4/Med16. The contribution of the two Gcn4 activation domains to transcription was gene specific and varied from synergistic to less than additive. Gcn4-dependent genes had a requirement for Gal11 ranging from 10-fold dependence to complete Gal11 independence, while the Gcn4-Taf12 interaction did not significantly contribute to the expression of any gene studied. Complementary methods identified three conserved Gal11 activatorbinding domains that bind each Gcn4 activation domain with micromolar affinity. These Gal11 activatorbinding domains contribute additively to transcription activation and Mediator recruitment at Gcn4-and Gal11-dependent genes. Although we found that the conserved Gal11 KIX domain contributes to Gal11 function, we found no evidence of specific Gcn4-KIX interaction and conclude that the Gal11 KIX domain does not function by specific interaction with Gcn4. Our combined results show gene-specific coactivator requirements, a surprising redundancy in activator-target interactions, and an activator-coactivator interaction mediated by multiple low-affinity protein-protein interactions.Activation of transcription, a key regulatory step in gene control, is the endpoint of many signal transduction pathways controlling cell growth, development, and the response to stress. Sequence-specific binding of transcription activators to gene regulatory regions initiates a cascade of events ultimately leading to the assembly of a functional transcription preinitiation complex (PIC) (52). This recruitment pathway involves the cooperative action of coactivator complexes and the transcription machinery (3,37,42,43,53). A subset of these coactivators (e.g., ATP-dependent remodelers and histone acetyltransferases) act to modify and remodel chromatin, allowing access of additional gene-specific factors and the transcription machinery to promoters, while other coactivators (e.g., SAGA, Mediator, and TFIID) directly interact with PolII and the general transcription factors to promote PIC assembly.Most of the activator-target interactions characterized to date involve activator-coactivator interactions rather than direct interactions with the general transcription factors (16,23,41,51,59,60,64,66), and individual activators are generally found to interact with multiple factors. However, for many of these activator-target contacts, it is not clear if the activatortarget contacts are promoter specific and why the requirement for specific coactivators varies at different promoters (12,43).The acidic transcription activators are an important and universal class of transcription factors that activate transcriptio...