A pLAFR1 cosmid clone (pPP346) carrying the nodulation region of the symbiotic plasmid pRme4lb was isolated from a gene library of Rhizobium meliloti 41 by direct complementation of a Nod-deletion mutant of R. meliloti. Agrobacterium tumefaciens and Rhizobium species containing pPP346 were able to form ineffective nodules on alfalfa. The 24-kilobase insert in pPP346 carries both the common nodulation genes and genes involved in host specificity of nodulation. It was shown that these two regions are essential and sufficient to determine the early events in nodulation. A new DNA region influencing the kinetics and efficiency of nodulation was also localized on the symbiotic megaplasmid at the right side of the nif genes.Rhizobia induce the formation of nitrogen-fixing nodules on the roots of leguminous plants. In the fast-growing species of rhizobia, genes determining the early steps of nodule development (nod genes) were located on large indigenous plasmids (2,11,22,23,26,38,47).In Rhizobium meliloti a very high molecular weight plasmid (megaplasmid) confers the ability to nodulate the host plant alfalfa (Medicago sativa) (2, 38). When this megaplasmid was mobilized into other Rhizobium species or Agrobacterium tumefaciens, the transconjugants induced nodules on alfalfa, indicating that the early steps of nodulation and host range specificity are coded by this symbiotic plasmid (pSym) (31, 44). These nodules, however, developed only to a certain stage: there was no initiation of infection thread formation, and bacteria were not released into the inner part of the nodule (44, 46).The nod genes are closely linked to the nif genes in R. meliloti (2, 38). In strain 1021, nod mutations were mapped 25 kilobases (kb) away from the nifKDH genes (33). In strain 41, R-prime plasmids carrying the essential nod genes and the nif structural genes were isolated (1), and the physical map of this region was constructed (29). The smallest nod-nif R-prime carried an insert of 90 kb. nod mutations were localized in two clusters within this region. On an 8.5-kb EcoRI fragment, nodulation genes conserved in a wide range of rhizobia (common nod genes) (29) and consisting of four genes (nodABC and nodD) were identified (41, 43; M. Gottfert, B. Horvath, E. Kondorosi, P. Putnoky, F. Rodriguez-Quiniones, and A. Kondorosi, J. Mol. Biol., in press, manuscript in preparation). A similar arrangement of the nodABC and nodD genes was found in strain 1021 (14,25). Genes determining host range specificity (hsn genes) for alfalfa were localized on a 6.8-kb EcoRI fragment about 6 kb away from the 8.5-kb common nod fragment (29). The 6.8-kb fragment carries four hsn genes (