See also Orfeo T, Mann KG. Mathematical and biological models of blood coagulation. This issue, pp 2397-8.Hemostasis and thrombosis hinge on the formation of thrombin. The underlying reaction mechanism is a web of proenzyme-enzyme conversions, controlled by positive and negative feedback reactions [1]. Current paradigm has it that thrombin formation is the results of chemical interactions between the components of this web and therefore is uniquely determined by the initial concentrations and reaction constants of its components [2,3].Essential steps of the thrombin forming process occur at membranes that contain negatively charged phospholipids [1].In an in vitro model system such procoagulant phospholipids are normally added in the form of relatively small vesicles that remain in suspension, so that the binding sites for the clotting factors are available in free solution. In vivo the binding takes place on membrane surfaces that present in a wound or ruptured plaque [4]. Factor VII(a) binds to tissue factor incorporated in cell membranes and factors II, X(a), V(a), IX(a) and VII(a) on adhering and aggregating activated platelets and on membrane remnants. Experiments in the presence of platelets and tissue factor bearing cells suggest that, as soon as such structures are present, physical transport through diffusion might play a role in determining thrombin generation velocities [5,6,7]. In coagulation experiments in plasma in vitro, procoagulant phospholipids are added to platelet-poor plasma (PPP) in the form of vesicles; in plateletrich plasma (PRP), they are provided by activated platelets [8].At the moment that a clot forms, $98% of thrombin is still to be generated [9,10]. The total amount of thrombin formed is an important determinant of the quality of hemostasis or the extent of thrombosis [11] and this thrombin is almost all formed within the fibrin mesh of the clot. In that mesh, the plasma is stagnant and the procoagulant surfaces of blood platelets and membrane fragments stick to the fibrin fibers [12]. Prothrombin conversion and other activation reactions thus are likely to be located on the insoluble fibrin mesh rather than in free and homogeneous solution and it is conceivable that not only chemical reaction rates but also diffusional transport to these surfaces determines the rate of thrombin formation.Whether diffusion or chemical interaction is rate limiting can be decided on the basis of temperature dependence. Diffusion velocity is proportional to absolute temperature, i.e. it will show a $14% increase between 10 and 50°C, whereas biochemical reactions will roughly double their pace if the temperature is raised by 10°C (see e.g. 13). Here, we show that the temperature dependency of thrombin generation in clotting plasma is such that we must assume that, when a clot has formed, diffusion starts to co-determine the rate of thrombin formation.Thrombin inactivation, on the contrary, is caused by stoichiometric reaction with specific plasma proteins, the most important of which is antithrombin. ...