Studies of the binding of small molecules to the heme in soluble type (or class) I cytochromes c have provided substantial insight into the equilibrium and kinetic properties of the heme domain, with longstanding application to understanding protein dynamics, stability, and folding (1-5). In addition, exogenous ligand binding is now proving very relevant to newfound functions of cytochrome (cyt) 2 c in apoptosis and peroxidative chemistry (reviewed in Refs. 6 and 7).For soluble cytochromes c and c 2 , exogenous ligands have been shown to bind to the heme with displacement of the native methionine ligand. In most cases, binding occurs preferentially to the ferric iron and causes substantial changes in the redox potential (8, 9) and spectral properties of the cytochrome (10 -12). These include cyanide, azide, fluoride, imidazole, pyridine, and nitric oxide (8,9,(13)(14)(15). For example, binding of imidazole (Im) to oxidized mitochondrial cyt c or bacterial cyt c 2 produces a blue shift in the Soret region as well as changes in a number of weak absorbance bands between 450 and 600 nm (10 -12). Binding also quenches a characteristic absorption band centered at 695 nm (11, 16 -18), which is attributed to a charge transfer interaction between the oxidized heme iron (Fe 3ϩ ) and the sulfur of the ligating methionine residue (5, 19). For ferrous cyt c, the dissociation constant for Im is more than an order of magnitude weaker (ferrous K d ϳ1 M, ferric K d ϭ 30 mM) (9,10,12,20,21).In contrast to the extensive work on cyt c and c 2 , very little is known about ligand interactions with the heme of cyt c 1 , which is a key component of the cyt bc 1 complex, a ubiquitous and ancient membrane-bound, energy-transducing, electron transport protein (22, 23). Cytochrome c 1 is an integral membrane protein with a single hydrophobic transmembrane helix and a globular heme-binding domain with a typical c-type heme covalently attached to the protein by thioether linkages to two cysteine residues. A histidine and a methionine provide the fifth and sixth heme iron ligands, respectively. Although the globular domain shares many of the properties and folds of type I cytochromes c, the sequence has little homology with that of cyt c or c 2 (22,24,25), and cyt c 1 is assigned to a separate class. The unusual structural features of cytochrome c 1 have been most convincingly accounted for by Baymann et al. (24). By comparing sequences of cyt c 1 from different species, they suggested that the expanded regions of cyt c 1 arose by evolution from a diheme cytochrome c 4 that lost the second heme. This hypothesis nicely explains why the globular heme-binding domain of cytochromes c 1 is up to 2 times larger than cyt c, with the major expansion in the C-terminal (or distal) half of the protein.Mutational studies on cyt c 1 have shown that changing the endogenous methionine ligand significantly modifies the midpoint potential of cyt c 1 (26 -29). However, very little has been reported for exogenous ligand interactions with the c 1 heme. Schejte...