The hair-growth cycle, a complex biological system requiring coordinate alterations in gene expression and cellular behavior, provides a challenging model for investigating the interplay of specific transcriptional regulation events. Here we report that the Barx2 homeodomain factor serves as a regulator of hair follicle remodeling (catagen), and loss of Barx2 in mice causes a defect both in the initiation and progression of catagen, resulting in a protracted first catagen, and later, causing short hair in adult gene-deleted mice. Barx2 negatively regulates its own promoter, and our study highlights the role of Barx2 as a repressor in the skin that can, unexpectedly, functionally interact with two WD40-domain factors distantly related to the yeast corepressor Tup1. These two corepressors, transducin-like enhancer of split and transducin -like 1, function through distinct and independent interactions with Barx2 for the repression of gene targets, including the Barx2 gene itself, emphasizing the roles of complementary repression strategies in engrailed homology-1 motif-containing homeodomain factors. Together, our data suggest that the hairremodeling defect of Barx2 mutant mice could be explained, in part, by failure to repress one or more critical target genes.A distinctive feature of the hair follicle is its periodic regeneration and degeneration throughout the lifetime of the organism in cycles of three phases: anagen, catagen, and telogen. In mice, hair follicle morphogenesis begins late in development and continues through growth, or anagen, of the first pelage until Ϸ2 weeks after birth. The final length of the hair is genetically determined by the period spent in anagen, with hair-generating cells of the bulb having a finite proliferative capacity that is influence by factors from the dermal papilla and surrounding tissues. Anagen terminates with the destruction of the growing part of the follicle in a remodeling process called catagen. Thereafter, a resting period, or telogen, intervenes with the finished hair normally retained in the diminutive follicle, until anagen reinitiates with the start of a new cycle of hair growth (1, 2). Two synchronous cycles of hair growth occur in juvenile mice, with consecutive waves of anagen-catagen-telogen moving from neck to tail, and thereafter only smaller patches of follicles cycle together in adult mice. From the human perspective, hair follicle remodeling is important because changes in the hair cycle underlie most disorders involving unwanted hair growth or loss (3, 4). Evidence is also emerging that hair cycling and wound healing share some basic molecular strategies (5).The transcriptional control of skin and hair development, and regulation of postnatal, cycling hair follicles, represents a complex system involving the coordinated actions of many intracellular signaling molecules and transcription factors. Recently, expression profiling has been used to systematically identify hair-cycle-associated genes and cluster them into major classes of expression over the...