Measuring the conformations of protein
and protein–ligand
complexes in solution is critical for investigating protein bioactivities,
but their rapid analyses remain as challenging problems. Here, we
report the coupling of Taylor dispersion analysis (TDA) with mass
spectrometry (MS) for the rapid conformation differentiation of protein
and noncovalent protein complex in solution environments. First, a
branched capillary design was applied to achieve double band detection
for the peak retention time correction in TDA measurements. After
ionization, analytes were further detected and distinguished by their
mass to charge (m/z) ratios in the
consequent MS analysis. As a result, protein or protein complex in
a mixture could be analyzed in terms of both hydrodynamic radius and m/z. The feasibility of this method was
verified by analyzing a mixture of angiotensin II and phenylalanine,
and the conformations of cytochrome C at different pH conditions were
then investigated. As proof-of-concept demonstrations, the complexes
of tri-N-acetylchitotriose with two proteins (lysozyme
and cytochrome C) were characterized with results verified by molecular
dynamics simulations. The TDA-MS method is promising for rapid structural
analyses of trace amounts protein–ligand complexes, which could
potentially be used to differentiate
intact protein or protein complex conformations.