2018
DOI: 10.1142/s0218202518500562
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Convergences of the squareroot approximation scheme to the Fokker–Planck operator

Abstract: We study the qualitative convergence behavior of a novel FV-discretization scheme of the Fokker–Planck equation, the squareroot approximation scheme (SQRA), that recently was proposed by Lie, Fackeldey and Weber [A square root approximation of transition rates for a markov state model, SIAM J. Matrix Anal. Appl. 34 (2013) 738–756] in the context of conformation dynamics. We show that SQRA has a natural gradient structure and that solutions to the SQRA equation converge to solutions of the Fokker–Planck equatio… Show more

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Cited by 33 publications
(44 citation statements)
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“…Theorem 2.3 For all n ≥ 1, there exists a unique solution ρ n ∈ P T to (32). Moreover, energy is dissipated along the time steps.…”
Section: A Variational Upstream Mobility Finite Volume Schemementioning
confidence: 98%
See 3 more Smart Citations
“…Theorem 2.3 For all n ≥ 1, there exists a unique solution ρ n ∈ P T to (32). Moreover, energy is dissipated along the time steps.…”
Section: A Variational Upstream Mobility Finite Volume Schemementioning
confidence: 98%
“…To bypass this difficulty, we adopt a formalism based on dissipation potentials inspired from the one of generalized gradient flows introduced by Mielke in [48]. This framework was used for instance to study the convergence of the semi-discrete in space squareroot Finite Volume approximation of the Fokker-Planck equation, see [32].…”
Section: Upstream Weighted Dissipation Potentialsmentioning
confidence: 99%
See 2 more Smart Citations
“…As an alternative for estimating the transition matrix for an overdamped Langevin process (such as (40)), one can use the square root approximation to get a cheap estimate of the rate matrix(Lie et al 2013;Heida 2018) and thereof get the transition matrix.…”
mentioning
confidence: 99%