Lipid profiles of the lipids from female gonads (LFG) and male gonads (LMG) of abalones (Haliotis discus hannai) were evaluated based on the analysis of phospholipid (PL) molecular species, PL class composition, fatty acid (FA) composition, and lipid class composition. These results suggested that lipids from abalone gonads were abundant in omega‐3 polyunsaturated FA (n − 3 PUFA, 14.42%–18.27% of total FAs) and PLs including phosphatidylcholine (PC, 21.26–47.85 mg g−1) and phosphatidylethanolamine (PE, 9.29–24.10 mg g−1). Furthermore, more than 60 molecular species of PC and PE were determined. Particularly, the molecular species containing n − 3 PUFA including eicosapentaenoic acid (EPA) constituted majority of PC and PE in LFG and LMG. By contrast, LFG contained more PC and PE species containing EPA. Considering the lipid profiles, abalone gonads are a potential source of PL‐form n − 3 PUFA.