The controlled aggregation of copper oxide nanoparticles (CuO NPs) induced by a multitopic carboxylic acid allows the formation of mesoporous structures with high surface area, in the order of 100 m2 g−1, as demonstrated herein. The main novelty in the designed process is the use, as a previous step, of a sacrificeable monotopic carboxylate ligand for capping the CuO NPs. This step avoids the often observed unwanted behavior of uncontrolled aggregation and material densification. The monotopic 3,6,9‐trioxadecanoate (HTODA) is used as the capping agent to prepare TODA@CuO, a starting material that forms colloidal dispersions in ethanol. For NPs self‐assembly, the bulky tricarboxylic acid 4,4′,4′′,‐benzene‐1,3,5‐triyl‐tris(benzoic acid) (H3BTB) is chosen as an efficient interlinker in the controlled aggregation. The obtained mesoporous network shows a considerable thermal stability, retaining ≈70% of its specific surface area after annealing at 300 °C under vacuum. Thermal treatment involves TODA capping agent elimination, but not BTB linker. The simultaneous reduction of the CuO NPs to a Cu2O/Cu mixture is observed.