SummaryPolymorphism in the human T cell receptor 3 chain (TCRB) gene complex includes haplotypes with different numbers of TCRBV genes. An insertion/deletion related polymorphism (IDR.P) in the human TCRBV region was found to involve TCRBV gene segments. Inserted TCRB haplotypes contain an additional 21.5 kb in which three TCRBV genes are encoded, members of the TCRBV7, TCRBV9, and TCRBV13 families. Two TCRBV gene segments were present only in inserted haplotypes; one of these, TCRBV7S3, is a functional gene and the other, TCRBV9S2(P), is a pseudogene because of an inframe termination colon. In addition, inserted haplotypes contain two identical copies of the TCRBVDS2 gene, whereas deleted haplotypes have only one copy. Ddeted haplotypes could be subdivided into two types, deleted*l and ddeted*2, on the basis of sequence variations in TCRBV6S7 and TCRBVDS2 genes. Both deleted~ and deleted'2 haplotypes contained the same number of TCRBV genes; both contain 60 genes of which 50 are functional, whereas, inserted haplotypes contained 63 genes of which 52 are functional. Comparisons of inserted region sequences with the homologous region in a deleted haplotype, and with sequences surrounding related TCRBV genes, revealed patterns of similarity that suggest insertion as well as deletion events have occurred in the evolution of the TCRBV gene complex. These data indicate that the genomic TCR repertoire is expanded in individuals who have inserted TCRBV haplotypes. The presence of additional TCRBV genes or, alternatively, the absence of certain TCRBV genes may have an impact upon immune responses and susceptibility to autoimmune diseases.T lymphocytes recognize foreign antigens as peptides presented by selfMHC antigens (1). The fine specificity ofT cells is determined by the T cell antigen receptor (TCR) that, in the majority of T cells, is composed of an oe and a 3 chain (2-5). For certain MHC-antigen combinations, responding T cells have been observed to use a restricted number of TCRBV genes in the formation of a TCR (6-7). Several strains of mice have major deletions in their genomic TCRB repertoire (8-11), including TCRBV genes used selectively in certain restricted responses. Mice with deletions in their TCRBV genomic repertoire fail to respond or respond very weakly to MHC-antigen combinations that require one of the ddeted TCRBV genes (12). Thus, deletions in the TCRBV repertoire can create a "hole in the T cell repertoire" with respect to particular antigens.In humans, no major ddetions of germline TCRBV genes have been reported; however, two independent insertion/deletion related polymorphisms (IDRP) 1 have been identified 1 Abbreviations used in this paper: IDRP, insertion/deletion related polymorphisms; SSCP, single-stranded conformational polymorphism.A preli~in2ry report was submitted as an abstract to the American Society for Histocompatibility and Immunogenetics 19th Annual Meeting 1993, Hum. lmmunol. 37:42. in the human TCRB gene complex (13,14). One ID1LP of ",~20 kb is located near the TCRBC regi...