Repetitive transcranial magnetic stimulation (rTMS) has been shown to alter cortical excitability that lasts beyond the duration of rTMS application itself. High-frequency rTMS leads primarily to facilitation, whereas low-frequency rTMS leads to inhibition of the treated cortex. However, the contribution of rTMS train duration is less clear. In this study, we investigated the effects of nine different rTMS protocols, including low and high frequencies, as well as short and long applications (1, 3 and 10 Hz applied for 1, 5 and 20 min), on visual cortex excitability in anaesthetized and paralysed cats by means of visual evoked potential (VEP) and electroencephalography (EEG) recordings. Our results show that 10 Hz rTMS applied for 1 and 5 min significantly enhanced early VEP amplitudes, while 1 and 3 Hz rTMS applied for 5 and 20 min significantly reduced them. No significant changes were found after 1 and 3 Hz rTMS applied for only 1 min, and 10 Hz rTMS applied for 20 min. EEG activity was only transiently (<20 s) affected, with increased delta activity after 1 and 3 Hz rTMS applied for 1 or 5 min. These findings indicate that the effects of rTMS on cortical excitability depend on the combination of stimulus frequency and duration (or total number of stimuli): short high-frequency trains seem to be more effective than longer trains, and low-frequency rTMS requires longer applications. Changes in the spectral composition of the EEG were not correlated to changes in VEP size. Repetitive transcranial magnetic stimulation (rTMS) is a noninvasive and largely painless technique to stimulate the human brain. It is preferentially applied to cortical areas with the intention to either disturb ongoing processing in the targeted area (virtual lesion) or to modulate the general excitability of the cortical network. Besides transient effects, numerous studies have shown that rTMS has modulatory effects on cortical excitability that last for seconds to many minutes beyond the duration of the rTMS application itself. The primary motor cortex has been used extensively for rTMS studies because the effects of stimulation are easy to quantify by measuring the size of motor-evoked potentials (MEPs). Findings to date suggest that the modulatory effects of rTMS on cortical excitability may be inhibitory or facilitatory depending on the frequency, intensity and duration of the stimulus (see Modugno et al. 2001). A few examples: high-frequency rTMS, especially at high stimulus intensities, leads to facilitation of corticospinal activity; a 10-pulse rTMS train of 20 Hz applied at a strength of 150% resting motor threshold (RMT) caused an increase in MEP size lasting for about 3 min (Pascual-Leone et al. 1994); a 30-pulse rTMS train at 120% RMT and 15 Hz caused a shorter and smaller increase in MEP size for only 90 s (Wu et al. 2000). Stimulation intensities below RMT usually require longer trains before any lasting effect is seen. Maeda et al. (2000a,b) reported a facilitation of MEPs for 2 min after administration of 240 pulses of 20 ...