In
the reaction of purines with ferrocenoyl chloride in dimethylformamide
(DMF), a regioselective acylation occurred. The two products have
been isolated and, according to detailed NMR analysis, identified
as N7- and N9-ferrocenoylated isomers. In
a more polar solvent, for example, in dimethylsulfoxide (DMSO), the
two isomers interconvert to each other. The N7/N9 isomerization was followed by 1H NMR spectroscopy,
until dynamic equilibrium was reached. Both kinetics and thermodynamics
of the transacylation process are governed by a C6-substituent on
the purine ring (R = NH2, Me, NHBz, OBz). The observed
rate constant for the N7/N9-isomerization
in the adenine system (R = NH2) is k
obs = 0.3668 h–1, whereas the corresponding
process in the C6-benzyloxypurine is 56 times slower. By use of density
functional theory calculations and molecular dynamics simulations,
several reaction pathways were considered and explored. Only the reaction
mechanism involving DMSO as a nucleophilic reactant is in harmony
with the experimental kinetic data. The calculated barrier (ΔG
⧧ = 107.9 kJ/mol; at the M06L/6-311+G(d,p)/SDD
level of theory) for this SN2-like reaction in the adenine
system agrees well with the experimental value of 102.7 kJ/mol. No
isomerization was detected in other organic solvents, for example,
acetonitrile, N,N-dimethylformamide,
or acetone, which indicated the exceptional nucleophilicity of DMSO.
Our results raise a warning when treating or dissolving acylated purines
in DMSO as they are prone to isomerization. We observed that the N7/N9-group transfer was specific not only for
the organometallic moiety only, but for other acyl groups in purines
as well. The relevance of this isomerization may be expected for a
series of nucleobases and heterocyclic systems in general.