Using positively charged patches embedded in the walls of a microreactor, we generated electroosmotic vortices to analyze chemical reactions involving the flow of viscoplastic species. Reactant species A and B undergo a reaction to produce species C, which possesses physical properties suitable for biomedical applications. We developed a modeling framework, extensively validated with the available experimental results as well, to solve relevant transport equations considering pertinent boundary conditions. By varying parameters, such as the Bingham number, diffusive Peclet number, relative concentration of species B, flow-behavior index, and Damkohler number within physically justified ranges, we examined the flow field, species concentration, average product concentration, and generated species flow rate. Our findings indicate that the liquid yield stress and shear-thinning nature strongly influence vortex strength and the structure of yielded and unyielded regions. Notably, electroosmotic vortices enhance product species concentration compared to cases without vortices across the chosen range of diffusive Peclet numbers, providing convective mixing strength for reactants. For lower Bingham number values, product concentration trends increase then decrease with increasing Peclet numbers, whereas for higher Bingham numbers, it exhibits a monotonic decrease. Additionally, lower Bingham numbers lead to increased average product concentration as flow-behavior index decreases, while higher Bingham numbers show the opposite trend. Furthermore, average product concentration increases up to critical Damkohler number values for smaller Bingham numbers but becomes insensitive to Damkohler number changes with greater Bingham numbers. These insights of our analysis pave the way for designing innovative, highly effective microreactors largely used for biochemical and biomedical applications.